Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.2e-154 549.7 464 100.0
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.8e-139 498.4 384 97.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 2.8e-125 453.0 382 88.0
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.3e-118 429.5 380 86.1
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.2e-99 367.9 383 80.4
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-99 367.9 383 80.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.9e-98 363.2 384 80.5
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.9e-97 360.5 384 77.3
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.9e-97 360.5 384 80.5
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.5e-97 360.1 386 79.3
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.2e-97 359.8 384 79.9
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.1e-96 357.1 386 75.6
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 3.9e-95 352.8 465 69.5
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.5e-94 350.9 388 75.5
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 2.8e-93 346.7 384 78.6
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 2.4e-92 343.6 386 77.5
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.1e-92 343.2 385 77.1
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 4.5e-91 339.3 387 78.6
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 5.9e-91 339.0 384 73.7
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.2e-90 337.0 386 77.7
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.9e-90 336.7 384 75.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 3.8e-90 336.3 382 73.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 5.0e-90 335.9 387 77.5
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 5.0e-90 335.9 386 77.2
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-89 334.7 385 75.8
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.2e-88 331.3 386 77.7
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.2e-88 331.3 385 77.7
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 3.6e-88 329.7 385 74.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 6.1e-88 328.9 385 75.1
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.0e-88 328.6 386 77.7
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.0e-87 328.2 351 77.8
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.8e-87 327.4 386 74.1
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.3e-87 327.0 384 74.0
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 2.3e-87 327.0 381 78.0
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 4.0e-87 326.2 385 71.9
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 4.0e-87 326.2 385 72.2
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.1e-86 324.7 384 76.0
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 2.0e-86 323.9 384 75.3
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 2.6e-86 323.6 384 76.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 3.3e-86 323.2 384 75.5
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 3.3e-86 323.2 382 76.2
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.7e-85 319.7 381 74.0
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.8e-84 317.4 386 76.4
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.1e-84 316.2 321 81.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 4.1e-84 316.2 384 74.2
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 3.5e-83 313.2 386 75.9
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 5.9e-83 312.4 382 73.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.9e-83 312.4 358 77.1
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.0e-82 311.6 386 74.6
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 3.8e-82 309.7 321 80.1
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 3.8e-82 309.7 384 74.0
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 8.5e-82 308.5 384 72.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.9e-81 307.4 384 72.7
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 9.4e-81 305.1 381 69.6
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 9.4e-81 305.1 358 73.7
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 9.4e-81 305.1 384 73.7
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.7e-80 303.5 384 74.2
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 4.7e-80 302.8 384 73.7
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.0e-79 301.6 382 73.3
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.3e-79 300.4 381 72.7
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.3e-79 300.4 381 70.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 4.0e-79 299.7 392 68.4
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 5.2e-79 299.3 381 72.7
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.8e-79 298.9 381 70.3
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 6.8e-79 298.9 384 74.0
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 8.8e-79 298.5 384 70.3
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-78 298.1 384 72.4
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.6e-78 297.0 381 68.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.4e-78 296.6 383 74.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.4e-78 296.6 386 69.7
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.7e-78 295.8 386 68.1
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.3e-77 294.7 387 69.8
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.3e-77 294.7 387 70.5
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.3e-77 294.7 381 71.9
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.7e-77 294.3 382 70.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.8e-77 293.5 387 71.8
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.1e-76 289.7 384 72.1
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 5.4e-76 289.3 384 72.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.4e-76 289.3 368 74.5
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.6e-75 287.7 383 72.6
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.0e-75 287.3 367 73.6
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 7.7e-75 285.4 384 71.6
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.0e-74 285.0 384 72.1
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 6.5e-74 282.3 384 71.4
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 8.5e-74 282.0 374 67.9
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.5e-73 280.4 373 67.6
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 4.2e-73 279.6 330 74.5
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.1e-72 277.3 387 69.5
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.8e-71 274.2 395 67.1
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.8e-71 274.2 383 70.5
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.3e-71 273.9 385 64.7
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.0e-71 273.5 395 66.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.2e-71 272.7 394 66.2
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 6.8e-71 272.3 388 64.9
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.2e-70 271.6 394 65.2
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.4e-70 269.6 384 70.8
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.3e-69 268.1 382 69.4
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.3e-69 268.1 392 68.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 2.8e-69 266.9 382 68.6
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 3.7e-69 266.5 389 68.9
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 8.3e-69 265.4 394 65.0
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.1e-68 265.0 384 67.2
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.1e-68 263.5 394 65.2
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.1e-68 263.5 394 65.2
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.1e-68 263.5 394 65.2
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 5.4e-68 262.7 388 66.2
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-67 261.5 328 72.3
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.0e-67 260.8 394 65.2
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.0e-67 260.8 394 65.2
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.3e-66 257.3 384 68.2
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.6e-66 255.8 391 66.2
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.9e-65 254.2 390 70.0
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.9e-65 254.2 381 68.8
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 4.3e-65 253.1 187 69.0
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 7.3e-65 252.3 391 68.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 6.1e-64 249.2 391 69.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 9.8e-62 241.9 395 67.6
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 3.7e-61 240.0 387 66.9
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 8.3e-61 238.8 348 65.8
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 3.2e-60 236.9 393 67.7
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 4.1e-60 236.5 393 67.7
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 9.2e-60 235.3 385 61.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 9.2e-60 235.3 329 70.5
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 4.3e-57 226.5 388 67.3
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 7.3e-57 225.7 383 66.8
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 9.5e-57 225.3 391 56.5
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.2e-53 214.2 387 57.9
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 4.9e-53 213.0 389 65.3
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.2e-48 198.4 297 73.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.6e-48 198.0 385 63.9
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 2.8e-48 197.2 388 45.6
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.1e-47 195.3 390 63.6
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.1e-47 195.3 390 63.6
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 5.2e-47 193.0 390 63.3
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.2e-46 191.8 381 63.8
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.7e-45 186.8 374 40.4
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 4.6e-43 179.9 327 66.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 4.6e-43 179.9 280 77.1
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.0e-42 178.7 286 72.4
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.1e-42 176.4 396 56.6
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 5.1e-42 176.4 393 52.9
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.1e-41 175.3 298 65.1
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.5e-41 174.1 378 61.1
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.7e-40 169.9 193 54.4
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.4e-39 168.3 192 53.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.5e-38 164.9 399 55.1
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 4.4e-38 163.3 341 53.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 5.8e-38 162.9 397 56.4
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 9.9e-38 162.2 256 72.7
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.3e-37 161.8 171 53.2
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.1e-36 156.8 118 67.8
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.1e-33 148.7 396 46.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.9e-33 147.9 250 78.8
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.3e-33 146.7 391 48.3
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 6.2e-32 142.9 400 54.5
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 8.9e-31 139.0 341 54.3
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 7.3e-25 119.4 118 68.6
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.8e-23 114.8 104 61.5
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.1e-23 114.0 101 65.3
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 1.3e-21 108.6 54 98.1
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.2e-20 104.0 54 94.4
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 5.4e-20 103.2 172 45.3
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.3e-18 98.6 120 47.5
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.1e-17 95.5 111 50.5
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 3.3e-17 94.0 249 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.1e-15 89.0 188 33.5
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.0e-14 84.7 114 64.0
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 2.1e-11 74.7 151 32.5
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.5e-09 67.8 87 48.3
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 1.3e-08 65.5 51 60.8
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 2.1e-08 64.7 154 83.1
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.8e-07 61.6 50 58.0
MD15G1359100 Malus domestica HOM05D004193 ORTHO05D004862 4.5e-06 57.0 29 89.7


User provided reference genes

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