Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06180 Corylus avellana HOM05D001425 ORTHO05D001272 4.6e-74 281.6 190 100.0
Cfa000649 Carpinus fangiana HOM05D001425 ORTHO05D001272 1.3e-31 140.6 190 50.5
CiPaw.09G072500 Carya illinoinensis HOM05D001425 ORTHO05D001272 9.3e-27 124.4 79 82.3
QL05p049746 Quercus lobata HOM05D001425 ORTHO05D001272 3.2e-19 99.4 69 73.9
Thecc.06G166200 Theobroma cacao HOM05D001425 ORTHO05D001272 2.1e-18 96.7 79 60.8
Glyma.05G160700 Glycine max HOM05D001425 ORTHO05D001272 1.0e-17 94.4 70 67.1
GSVIVG01021251001 Vitis vinifera HOM05D001425 ORTHO05D001272 1.0e-17 94.4 74 63.5
VMungo0251G3022 Vigna mungo HOM05D001425 ORTHO05D001272 3.0e-17 92.8 70 65.7
MD10G1275900 Malus domestica HOM05D001425 ORTHO05D001272 8.8e-17 91.3 82 57.3
Glyma.08G118100 Glycine max HOM05D001425 ORTHO05D001272 2.5e-16 89.7 70 64.3
Duzib235G0112 Durio zibethinus HOM05D001425 ORTHO05D001272 4.3e-16 89.0 77 54.5
Phvul.002G240800 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 5.7e-16 88.6 70 61.4
TAR626G1246 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.7e-15 87.0 79 58.2
CSS0039671 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.8e-15 85.5 74 59.5
Gohir.A05G153700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 4.8e-15 85.5 75 56.0
TPR.G33016 Trifolium pratense HOM05D001425 ORTHO05D001272 8.2e-15 84.7 78 52.6
Duzib160G0077 Durio zibethinus HOM05D001425 ORTHO05D001272 1.1e-14 84.3 75 56.0
Gorai.009G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 1.1e-14 84.3 72 58.3
Hma1.2p1_0829F.1_g225230 Hydrangea macrophylla HOM05D001425 ORTHO05D001272 1.1e-14 84.3 71 60.6
Lj4g0009651 Lotus japonicus HOM05D001425 ORTHO05D001272 1.1e-14 84.3 66 62.1
Lalb_Chr07g0186331 Lupinus albus HOM05D001425 ORTHO05D001272 1.1e-14 84.3 69 60.9
TPR.G6770 Trifolium pratense HOM05D001425 ORTHO05D001272 1.1e-14 84.3 78 52.6
TAR629G2569 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.1e-14 84.3 73 56.2
COL.COLO4_31243 Corchorus olitorius HOM05D001425 ORTHO05D001272 1.8e-14 83.6 77 55.8
Medtr8g085150 Medicago truncatula HOM05D001425 ORTHO05D001272 1.8e-14 83.6 75 56.0
Dinv12758 Davidia involucrata HOM05D001425 ORTHO05D001272 2.4e-14 83.2 71 56.3
Nn1g04511 Nelumbo nucifera HOM05D001425 ORTHO05D001272 3.1e-14 82.8 74 54.1
FvH4_3g07370 Fragaria vesca HOM05D001425 ORTHO05D001272 4.1e-14 82.4 77 55.8
FAN11G3009 Fragaria x ananassa HOM05D001425 ORTHO05D001272 4.1e-14 82.4 77 55.8
Gohir.D06G138400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 9.1e-14 81.3 74 52.7
FAN16G2157 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.2e-13 80.9 77 51.9
FAN13G2418 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.5e-13 80.5 77 53.2
FAN21G1795 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.5e-13 80.5 77 53.2
Medtr8g087020 Medicago truncatula HOM05D001425 ORTHO05D001272 1.5e-13 80.5 65 58.5
Gohir.D05G156400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 2.0e-13 80.1 72 56.9
Ca_17900_v3 Cicer arietinum L. HOM05D001425 ORTHO05D001272 2.6e-13 79.7 71 56.3
Gorai.010G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 3.4e-13 79.3 74 51.4
Prupe.4G066300 Prunus persica HOM05D001425 ORTHO05D001272 3.4e-13 79.3 75 53.3
Lalb_Chr12g0204971 Lupinus albus HOM05D001425 ORTHO05D001272 4.5e-13 79.0 69 55.1
MD05G1295800 Malus domestica HOM05D001425 ORTHO05D001272 4.5e-13 79.0 83 50.6
Gohir.D10G035700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 5.9e-13 78.6 76 53.9
Gorai.011G037600 Gossypium raimondii HOM05D001425 ORTHO05D001272 5.9e-13 78.6 76 53.9
Psat7g069880 Pisum sativum HOM05D001425 ORTHO05D001272 5.9e-13 78.6 72 52.8
RcHm_v2.0_Chr5g0011571 Rosa chinensis HOM05D001425 ORTHO05D001272 5.9e-13 78.6 71 56.3
Gohir.A06G132900 Gossypium hirsutum HOM05D001425 ORTHO05D001272 7.7e-13 78.2 74 50.0
TPR.G6742 Trifolium pratense HOM05D001425 ORTHO05D001272 7.7e-13 78.2 72 54.2
FAN25G1823 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.0e-12 77.8 77 51.9
Psat0s2741g0080 Pisum sativum HOM05D001425 ORTHO05D001272 1.0e-12 77.8 79 48.1
Nn3g21110 Nelumbo nucifera HOM05D001425 ORTHO05D001272 1.3e-12 77.4 71 53.5
Dinv32343 Davidia involucrata HOM05D001425 ORTHO05D001272 1.7e-12 77.0 70 55.7
arahy.Tifrunner.gnm1.ann1.A8KLXT Arachis hypogaea HOM05D001425 ORTHO05D001272 2.2e-12 76.6 101 42.6
Ciclev10016999m.g Citrus clementina HOM05D001425 ORTHO05D001272 2.2e-12 76.6 73 54.8
Gohir.A10G035000 Gossypium hirsutum HOM05D001425 ORTHO05D001272 2.9e-12 76.3 76 51.3
Potri.004G060800 Populus trichocarpa HOM05D001425 ORTHO05D001272 2.9e-12 76.3 55 65.5
Sabra11G0058000 Salix brachista HOM05D001425 ORTHO05D001272 3.8e-12 75.9 71 53.5
MELO3C007201.2 Cucumis melo HOM05D001425 ORTHO05D001272 5.0e-12 75.5 65 56.9
ClCG01G023870 Citrullus lanatus HOM05D001425 ORTHO05D001272 8.5e-12 74.7 64 56.2
Eucgr.D00475 Eucalyptus grandis HOM05D001425 ORTHO05D001272 8.5e-12 74.7 74 50.0
Peaxi162Scf00405g00117 Petunia axillaris HOM05D001425 ORTHO05D001272 1.1e-11 74.3 67 55.2
Potri.011G070000 Populus trichocarpa HOM05D001425 ORTHO05D001272 1.1e-11 74.3 71 50.7
Cc02_g15540 Coffea canephora HOM05D001425 ORTHO05D001272 1.9e-11 73.6 67 49.3
CsaV3_6G051020 Cucumis sativus L. HOM05D001425 ORTHO05D001272 2.5e-11 73.2 65 55.4
TWI09G0354 Tripterygium wilfordii HOM05D001425 ORTHO05D001272 3.2e-11 72.8 80 52.5
Sabra04G0040100 Salix brachista HOM05D001425 ORTHO05D001272 4.2e-11 72.4 72 51.4
Actinidia35598 Actinidia chinensis HOM05D001425 ORTHO05D001272 5.5e-11 72.0 72 48.6
Cpa.g.sc7.94 Carica papaya HOM05D001425 ORTHO05D001272 9.4e-11 71.2 72 56.9
PGR042G0512 Punica granatum HOM05D001425 ORTHO05D001272 9.4e-11 71.2 71 56.3
Sed0026621 Sechium edule HOM05D001425 ORTHO05D001272 1.2e-10 70.9 66 53.0
Sed0000998 Sechium edule HOM05D001425 ORTHO05D001272 1.6e-10 70.5 66 53.0
TAR626G0916 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.6e-10 70.5 56 60.7
Nitab4.5_0002458g0050 Nicotiana tabacum HOM05D001425 ORTHO05D001272 2.1e-10 70.1 71 49.3
arahy.Tifrunner.gnm1.ann1.T2RFJB Arachis hypogaea HOM05D001425 ORTHO05D001272 2.7e-10 69.7 105 40.0
Manes.16G038700 Manihot esculenta HOM05D001425 ORTHO05D001272 3.6e-10 69.3 71 52.1
Actinidia16777 Actinidia chinensis HOM05D001425 ORTHO05D001272 6.1e-10 68.6 72 50.0
Sp1g25200 Schrenkiella parvula HOM05D001425 ORTHO05D001272 6.1e-10 68.6 93 45.2
Nitab4.5_0005428g0040 Nicotiana tabacum HOM05D001425 ORTHO05D001272 7.9e-10 68.2 67 50.7
Oeu041734.1 Olea europaea HOM05D001425 ORTHO05D001272 7.9e-10 68.2 76 44.7
Oeu039884.1 Olea europaea HOM05D001425 ORTHO05D001272 1.8e-09 67.0 76 43.4
Atru.chr10.1575 Acer truncatum HOM05D001425 ORTHO05D001272 2.3e-09 66.6 74 48.6
THA.LOC104820606 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 3.0e-09 66.2 78 44.9
AL1G43060 Arabidopsis lyrata HOM05D001425 ORTHO05D001272 3.9e-09 65.9 75 46.7
Thhalv10009779m.g Eutrema salsugineum HOM05D001425 ORTHO05D001272 8.8e-09 64.7 74 41.9
THA.LOC104812642 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 8.8e-09 64.7 78 44.9
AT1G29270 Arabidopsis thaliana HOM05D001425 ORTHO05D001272 1.1e-08 64.3 73 46.6
CDE06G2729 Ceratophyllum demersum HOM05D001425 ORTHO05D001272 1.5e-08 63.9 71 49.3
A07p10760 Brassica napus HOM05D001425 ORTHO05D001272 3.3e-08 62.8 71 43.7
BraA07t28870Z Brassica rapa HOM05D001425 ORTHO05D001272 3.3e-08 62.8 71 43.7
Manes.17G058800 Manihot esculenta HOM05D001425 ORTHO05D001272 3.3e-08 62.8 73 46.6
BcaC06g35421 Brassica carinata HOM05D001425 ORTHO05D001272 5.7e-08 62.0 71 42.3
C07p16370 Brassica napus HOM05D001425 ORTHO05D001272 5.7e-08 62.0 71 42.3
BolC7t42131H Brassica oleracea HOM05D001425 ORTHO05D001272 5.7e-08 62.0 71 42.3
CDE02G3304 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 5.7e-08 62.0 70 50.0
Oeu060166.1 Olea europaea HOM05D001425 ORTHO05D001272 5.7e-08 62.0 62 48.4
Solyc03g006040.3 Solanum lycopersicum HOM05D001425 ORTHO05D001272 7.4e-08 61.6 70 50.0
PGSC0003DMG400026751 Solanum tuberosum HOM05D001425 ORTHO05D001272 9.7e-08 61.2 70 50.0
Potri.006G106900 Populus trichocarpa HOM05D001425 ORTHO05D001272 1.3e-07 60.8 76 47.4
Aa31LG6G6260 Aethionema arabicum HOM05D001425 ORTHO05D001272 1.7e-07 60.5 72 47.2
Carub.0001s2748 Capsella rubella HOM05D001425 ORTHO05D001272 1.7e-07 60.5 75 44.0
CAN.G866.32 Capsicum annuum HOM05D001425 ORTHO05D001272 2.2e-07 60.1 70 48.6
GSVIVG01020751001 Vitis vinifera HOM05D001425 ORTHO05D001272 2.2e-07 60.1 65 49.2
PSO782G3214 Papaver somniferum HOM05D001425 ORTHO05D001272 2.8e-07 59.7 56 51.8
Sopen03g002050 Solanum pennellii HOM05D001425 ORTHO05D001272 3.7e-07 59.3 70 48.6
BcaB03g13893 Brassica carinata HOM05D001425 ORTHO05D001272 4.8e-07 58.9 71 39.4
CDE07G1206 Ceratophyllum demersum HOM05D001425 ORTHO05D001272 4.8e-07 58.9 77 41.6
MBI15_g26251_MAGBIO Magnolia biondii HOM05D001425 ORTHO05D001272 4.8e-07 58.9 76 44.7
MD03G1058700 Malus domestica HOM05D001425 ORTHO05D001272 4.8e-07 58.9 74 45.9
PSO170G6757 Papaver somniferum HOM05D001425 ORTHO05D001272 4.8e-07 58.9 56 51.8
Sabra04G0150500 Salix brachista HOM05D001425 ORTHO05D001272 6.3e-07 58.5 76 46.1
Duzib264G0849 Durio zibethinus HOM05D001425 ORTHO05D001272 8.2e-07 58.2 82 42.7
Sabra06G0083200 Salix brachista HOM05D001425 ORTHO05D001272 8.2e-07 58.2 76 46.1
Ah.09g233510 Amaranthus hybridus HOM05D037095 ORTHO05D001272 1.1e-06 57.8 68 44.1
CARHR028590 Cardamine hirsuta HOM05D001425 ORTHO05D001272 1.1e-06 57.8 74 41.9
QL07p033204 Quercus lobata HOM05D001425 ORTHO05D001272 1.1e-06 57.8 74 43.2
ATR1127G099 Amborella trichopoda HOM05D001425 ORTHO05D001272 1.4e-06 57.4 78 39.7
CDE06G0610 Ceratophyllum demersum HOM05D001425 ORTHO05D001272 1.4e-06 57.4 77 40.3
Duzib147G1434 Durio zibethinus HOM05D001425 ORTHO05D001272 1.4e-06 57.4 82 41.5
VMungo1383G1922 Vigna mungo HOM05D001425 ORTHO05D001272 1.8e-06 57.0 76 42.1
MSTRG.16167 Avicennia marina HOM05D001425 ORTHO05D001272 2.4e-06 56.6 68 47.1
EL10Ac8g20563 Beta vulgaris HOM05D001425 ORTHO05D001272 3.1e-06 56.2 46 58.7
Potri.016G132600 Populus trichocarpa HOM05D001425 ORTHO05D001272 3.1e-06 56.2 76 44.7
MSTRG.13230 Avicennia marina HOM05D001425 ORTHO05D001272 4.1e-06 55.8 72 44.4
TAR369G0874 Trochodendron aralioides HOM05D001425 ORTHO05D001272 4.1e-06 55.8 82 42.7
Eucgr.A00656 Eucalyptus grandis HOM05D001425 ORTHO05D001272 5.3e-06 55.5 93 39.8
Hma1.2p1_1349F.1_g277390 Hydrangea macrophylla HOM05D001425 ORTHO05D001272 5.3e-06 55.5 81 45.7
MD04G1170700 Malus domestica HOM05D001425 ORTHO05D001272 5.3e-06 55.5 71 45.1
Nn2g11078 Nelumbo nucifera HOM05D001425 ORTHO05D001272 5.3e-06 55.5 74 43.2
Phvul.008G087200 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 5.3e-06 55.5 76 42.1
SalBow7G3660 Salvia bowleyana HOM05D001425 ORTHO05D001272 5.3e-06 55.5 66 42.4
Thecc.04G025700 Theobroma cacao HOM05D001425 ORTHO05D001272 5.3e-06 55.5 82 41.5
Dinv12254 Davidia involucrata HOM05D014651 ORTHO05D001272 7.0e-06 55.1 52 53.8
Medtr7g072470 Medicago truncatula HOM05D001425 ORTHO05D001272 7.0e-06 55.1 79 38.0
Prupe.6G045200 Prunus persica HOM05D001425 ORTHO05D001272 7.0e-06 55.1 80 46.2
Atru.chr12.141 Acer truncatum HOM05D001425 ORTHO05D001272 9.1e-06 54.7 73 41.1
Aqoxy4G02152 Aquilegia oxysepala HOM05D001425 ORTHO05D001272 9.1e-06 54.7 70 42.9
CiPaw.13G066800 Carya illinoinensis HOM05D001425 ORTHO05D001272 9.1e-06 54.7 92 41.3
COL.COLO4_11181 Corchorus olitorius HOM05D001425 ORTHO05D001272 9.1e-06 54.7 84 40.5
COL.COLO4_29264 Corchorus olitorius HOM05D001425 ORTHO05D001272 9.1e-06 54.7 74 41.9
COL.COLO4_36097 Corchorus olitorius HOM05D001425 ORTHO05D001272 9.1e-06 54.7 84 44.0
MD12G1184400 Malus domestica HOM05D001425 ORTHO05D001272 9.1e-06 54.7 88 42.0


User provided reference genes

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