Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 0.0e+00 1527.3 805 100.0
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 9.1e-273 943.7 736 72.7
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 5.2e-244 848.2 725 67.2
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 4.7e-237 825.1 735 63.9
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 9.2e-233 810.8 724 64.8
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.2e-229 800.4 721 63.1
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.1e-229 799.7 722 63.9
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 3.6e-229 798.9 736 62.8
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 1.5e-227 793.5 722 63.7
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 1.4e-225 786.9 736 62.9
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 5.4e-225 785.0 721 61.9
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 1.6e-224 783.5 720 62.6
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.0e-224 783.1 736 60.9
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 1.0e-223 780.8 736 61.4
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 1.0e-223 780.8 721 62.7
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.3e-223 780.4 736 60.7
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 5.0e-223 778.5 721 62.6
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.0e-223 778.5 736 61.0
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 3.3e-222 775.8 722 62.5
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 3.3e-222 775.8 720 62.2
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 5.6e-222 775.0 721 61.4
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.3e-222 774.6 722 62.3
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.3e-222 774.6 722 62.3
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 9.5e-222 774.2 722 61.8
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.1e-221 773.1 722 62.3
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 3.6e-221 772.3 736 60.6
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 6.2e-221 771.5 736 61.3
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 6.2e-221 771.5 720 61.5
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 1.8e-220 770.0 721 61.4
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.0e-220 768.8 722 61.9
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.2e-220 768.5 736 60.2
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 8.9e-220 767.7 722 61.5
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 2.0e-219 766.5 720 61.2
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 4.4e-219 765.4 736 59.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 9.8e-219 764.2 736 59.9
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 2.2e-218 763.1 736 59.9
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 6.4e-218 761.5 720 60.6
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 6.4e-218 761.5 736 59.8
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 8.3e-218 761.1 721 61.3
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 1.1e-217 760.8 736 59.8
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 2.4e-217 759.6 736 59.9
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 3.2e-217 759.2 739 59.5
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.2e-217 759.2 736 59.8
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 3.2e-217 759.2 721 60.7
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 3.2e-217 759.2 740 59.7
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 3.2e-217 759.2 719 61.1
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 4.1e-217 758.8 720 61.2
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 4.1e-217 758.8 727 60.1
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 5.4e-217 758.4 720 61.1
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 7.1e-217 758.1 738 60.3
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 9.2e-217 757.7 736 59.4
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 1.2e-216 757.3 736 59.9
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 2.7e-216 756.1 736 59.0
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 2.7e-216 756.1 734 59.7
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 6.0e-216 755.0 721 60.7
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 2.3e-215 753.1 721 60.1
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 3.0e-215 752.7 738 59.8
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 3.9e-215 752.3 736 58.4
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 3.9e-215 752.3 720 60.1
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 3.9e-215 752.3 743 59.2
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 1.1e-214 750.7 720 59.6
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 1.9e-214 750.0 721 58.7
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.6e-213 746.9 742 58.5
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 1.6e-213 746.9 742 58.5
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 3.6e-213 745.7 721 58.3
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 4.7e-213 745.3 739 57.8
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 8.1e-213 744.6 724 59.0
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 4.0e-212 742.3 747 58.1
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 4.0e-212 742.3 736 58.3
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 4.0e-212 742.3 724 58.8
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 8.9e-212 741.1 747 58.1
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 2.0e-211 740.0 720 59.9
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 2.6e-211 739.6 724 58.7
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.9e-211 737.6 736 58.6
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 4.9e-210 735.3 721 59.9
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.9e-210 735.3 721 59.2
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 6.4e-210 734.9 720 59.0
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.4e-209 733.8 721 59.2
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 7.1e-209 731.5 721 58.9
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 2.1e-208 729.9 797 55.6
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 3.5e-208 729.2 721 58.8
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.3e-207 726.5 736 57.3
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 3.9e-207 725.7 737 57.9
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 1.5e-206 723.8 743 57.6
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 1.5e-206 723.8 721 58.8
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.5e-206 723.8 736 56.8
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 1.2e-205 720.7 737 57.5
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.8e-205 719.5 721 57.0
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 4.7e-205 718.8 723 57.7
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 5.2e-204 715.3 721 58.8
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 2.0e-203 713.4 735 58.4
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 2.6e-203 713.0 721 57.6
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 1.0e-199 701.0 698 59.3
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 1.4e-196 690.6 791 53.5
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 5.3e-196 688.7 760 54.7
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 6.9e-196 688.3 742 54.4
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 2.0e-195 686.8 736 55.6
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 3.4e-195 686.0 748 55.1
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 9.9e-195 684.5 723 55.3
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 7.1e-193 678.3 756 54.8
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 1.3e-191 674.1 657 58.8
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 1.1e-190 671.0 736 55.4
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 5.3e-188 662.1 720 55.1
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.2e-187 661.0 691 56.2
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 2.0e-187 660.2 580 67.2
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 6.4e-186 655.2 700 56.1
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 1.3e-181 641.0 582 64.8
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 8.2e-181 638.3 740 53.4
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 2.7e-176 623.2 723 50.1
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 6.0e-176 622.1 742 52.4
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.1e-174 617.8 721 53.3
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 2.2e-170 603.6 721 51.5
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 3.2e-169 599.7 731 48.6
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 1.1e-166 591.3 721 50.1
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 8.5e-162 575.1 735 50.2
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 8.0e-152 542.0 724 46.1
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 6.1e-144 515.8 353 77.1
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 5.2e-143 512.7 555 55.3
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.3e-141 508.1 736 42.9
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 8.5e-138 495.4 362 75.4
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 4.2e-137 493.0 769 43.2
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 4.2e-129 466.5 613 48.6
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 4.9e-117 426.4 338 69.2
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 6.0e-115 419.5 499 52.1
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.5e-105 387.5 371 58.5
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 2.4e-92 344.4 484 47.7
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 5.2e-87 326.6 414 50.5
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 5.1e-82 310.1 841 32.1
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.2e-75 288.9 287 58.5
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.3e-69 268.9 356 48.3
CDE09G1393 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 2.3e-66 258.1 212 60.4
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.5e-65 255.4 344 48.5
Solyc07g017530.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.5e-65 255.4 194 68.6
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 2.3e-58 231.5 346 43.4
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.1e-49 202.6 190 58.4
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 2.0e-49 201.8 741 26.6
SEGI_20709 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 4.3e-49 200.7 169 63.3
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 1.1e-47 196.1 116 89.7
ClCG08G005090 Citrullus lanatus HOM05D003653 ORTHO05D004249 3.4e-46 191.0 156 64.7
QL02p096242 Quercus lobata HOM05D003653 ORTHO05D004249 1.1e-44 186.0 143 67.1
Nitab4.5_0000055g0040 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.7e-43 180.6 166 62.7
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 1.0e-42 179.5 282 45.7
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 9.1e-39 166.4 336 39.0
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 7.2e-36 156.8 228 46.1
SEGI_20750 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 2.3e-34 151.8 103 72.8
BraA02t06914Z Brassica rapa HOM05D003653 ORTHO05D004249 7.0e-31 140.2 139 57.6
TAR383G0271 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.3e-29 136.0 86 84.9
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 3.2e-28 131.3 666 22.7
CiPaw.07G188100 Carya illinoinensis HOM05D003653 ORTHO05D004249 2.1e-27 128.6 91 74.7
ECA232G0158 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.9e-21 108.2 97 59.8
Gohir.D08G133700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.1e-19 102.1 126 47.6
SEGI_27322 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 4.7e-19 100.9 63 77.8
CSS0010583 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 8.0e-19 100.1 63 76.2
Gorai.004G136800 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.8e-18 99.0 126 46.8
CSS0016569 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.0e-17 95.5 65 69.2
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.1e-15 89.7 51 84.3
CSS0016294 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 3.1e-15 88.2 71 66.2
Medtr8g018610 Medicago truncatula HOM05D003653 ORTHO05D004249 4.5e-14 84.3 51 76.5
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 1.1e-12 79.7 52 80.8
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 4.2e-12 77.8 52 80.8
MBI08_g05369_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 6.1e-11 73.9 55 74.5
MCO01G230 Micromonas commoda HOM05D003653 ORTHO05D004249 3.0e-10 71.6 179 25.7
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 1.2e-09 69.7 38 92.1
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 1.2e-09 69.7 38 92.1
Lsat_1_v5_gn_6_63001 Lactuca sativa HOM05D003653 ORTHO05D004249 1.2e-09 69.7 38 92.1
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 1.2e-09 69.7 38 92.1
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 2.6e-09 68.6 37 91.9
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 3.4e-09 68.2 38 89.5
Sopen07g006330 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-08 66.2 68 64.7


User provided reference genes

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