Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 4.2e-96 354.8 190 100.0
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 7.8e-74 280.8 168 91.7
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.3e-68 263.5 151 94.0
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 5.4e-67 258.1 151 91.4
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 4.6e-66 255.0 151 89.4
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 1.0e-65 253.8 151 89.4
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 1.3e-65 253.4 151 90.7
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 2.3e-65 252.7 140 97.1
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.5e-64 250.0 151 88.7
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.5e-64 250.0 151 88.7
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 1.5e-64 250.0 151 91.4
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 3.3e-64 248.8 151 87.4
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 4.3e-64 248.4 151 88.7
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 1.2e-63 246.9 151 87.4
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 1.2e-63 246.9 151 89.4
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 1.8e-62 243.0 151 86.8
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.4e-62 242.7 151 88.1
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 2.4e-62 242.7 151 85.4
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 5.2e-62 241.5 151 85.4
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 6.8e-62 241.1 151 86.8
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 1.5e-61 240.0 151 84.1
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 2.0e-61 239.6 151 84.1
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 2.0e-61 239.6 151 86.1
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 5.8e-61 238.0 151 86.1
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 1.3e-60 236.9 154 83.1
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 2.2e-60 236.1 151 82.1
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 2.2e-60 236.1 151 84.8
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 2.2e-60 236.1 151 84.8
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.2e-60 236.1 151 84.1
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 4.9e-60 235.0 151 83.4
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 6.4e-60 234.6 151 83.4
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 1.1e-59 233.8 151 84.8
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 1.4e-59 233.4 151 83.4
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 1.4e-59 233.4 151 83.4
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 1.9e-59 233.0 151 83.4
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 1.9e-59 233.0 151 84.1
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 3.2e-59 232.3 151 83.4
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 4.2e-59 231.9 151 80.8
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 5.4e-59 231.5 151 83.4
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 5.4e-59 231.5 151 85.4
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.2e-58 230.3 151 81.5
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.2e-58 230.3 151 81.5
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 1.6e-58 229.9 151 82.1
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 1.6e-58 229.9 151 85.4
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.6e-58 229.9 151 85.4
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 2.1e-58 229.6 151 82.1
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 2.1e-58 229.6 151 82.8
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.1e-58 229.6 151 82.1
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 2.1e-58 229.6 151 81.5
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 2.7e-58 229.2 151 82.8
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.6e-58 228.4 150 85.3
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.6e-58 228.4 150 85.3
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 4.6e-58 228.4 151 81.5
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 6.0e-58 228.0 151 82.8
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 7.8e-58 227.6 151 81.5
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 7.8e-58 227.6 151 82.1
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 1.0e-57 227.3 151 80.8
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 1.0e-57 227.3 151 80.8
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 1.0e-57 227.3 151 80.8
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 2.3e-57 226.1 151 80.1
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.3e-57 226.1 150 84.7
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 2.3e-57 226.1 151 79.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 3.0e-57 225.7 151 81.5
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 3.0e-57 225.7 151 81.5
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 3.9e-57 225.3 151 80.8
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 3.9e-57 225.3 151 80.8
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.9e-57 225.3 151 80.8
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 3.9e-57 225.3 151 80.1
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 5.1e-57 224.9 151 79.5
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 6.6e-57 224.6 151 80.8
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 6.6e-57 224.6 151 80.8
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 6.6e-57 224.6 151 82.1
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 8.7e-57 224.2 150 84.0
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 8.7e-57 224.2 151 82.8
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 1.9e-56 223.0 151 80.8
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 4.3e-56 221.9 151 80.1
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 5.6e-56 221.5 151 77.5
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 1.3e-55 220.3 151 78.1
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 1.3e-55 220.3 161 73.9
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 2.1e-55 219.5 151 79.5
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 2.8e-55 219.2 151 80.1
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 3.6e-55 218.8 151 78.8
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 6.2e-55 218.0 151 77.5
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 1.4e-54 216.9 136 86.8
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.4e-54 216.9 151 78.8
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 3.1e-54 215.7 151 75.5
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 3.1e-54 215.7 151 79.5
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 4.0e-54 215.3 151 76.8
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 6.9e-54 214.5 151 78.1
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 1.2e-53 213.8 176 70.5
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.5e-53 213.4 151 75.5
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 2.0e-53 213.0 151 78.1
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 2.6e-53 212.6 151 77.5
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 3.4e-53 212.2 151 73.5
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 5.8e-53 211.5 140 83.6
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 7.6e-53 211.1 151 76.8
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 2.2e-52 209.5 151 74.8
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 3.8e-52 208.8 151 72.8
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 3.8e-52 208.8 151 72.8
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 4.9e-52 208.4 151 76.2
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 8.4e-52 207.6 151 72.2
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 8.4e-52 207.6 151 72.8
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 5.4e-51 204.9 151 72.2
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 7.1e-51 204.5 151 69.5
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 2.7e-50 202.6 147 74.8
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 4.6e-50 201.8 151 72.8
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 7.9e-50 201.1 151 72.2
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 5.1e-49 198.4 122 91.0
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 1.5e-48 196.8 137 77.4
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 1.6e-47 193.4 151 72.8
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 3.6e-47 192.2 145 77.2
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 1.1e-46 190.7 137 75.2
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.8e-46 189.9 151 72.2
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 1.8e-46 189.9 151 72.2
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 5.5e-43 178.3 246 50.0
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 7.9e-42 174.5 134 74.6
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 8.7e-41 171.0 151 65.6
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 4.0e-38 162.2 114 76.3
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 2.0e-37 159.8 151 62.9
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 5.8e-37 158.3 150 56.0
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.9e-35 153.3 107 76.6
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.5e-35 152.9 180 48.9
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 2.5e-35 152.9 150 56.0
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 1.2e-34 150.6 132 65.9
SEGI_01409 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.9e-29 131.7 118 62.7
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.9e-28 129.4 96 72.9
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 3.2e-27 125.9 76 86.8
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 3.2e-27 125.9 192 45.3
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 3.0e-25 119.4 170 44.7
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 7.4e-24 114.8 167 44.3
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 7.4e-24 114.8 74 82.4
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 1.6e-23 113.6 74 81.1
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 2.2e-23 113.2 92 67.4
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.2e-21 107.5 74 79.7
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.0e-20 104.4 79 70.9
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 7.2e-19 98.2 126 41.3
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 7.4e-16 88.2 92 58.7
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 3.7e-15 85.9 120 50.0
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 3.6e-10 69.3 50 76.0
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 1.8e-09 67.0 50 74.0
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 2.3e-09 66.6 50 74.0
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 7.4e-08 61.6 50 70.0
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 9.7e-08 61.2 50 72.0
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 9.7e-08 61.2 33 90.9
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.3e-07 60.8 150 30.7


User provided reference genes

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