Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06153 Corylus avellana HOM05D000247 ORTHO05D008926 2.9e-111 405.2 202 100.0
CAN.G1299.10 Capsicum annuum HOM05D000247 ORTHO05D008926 1.0e-15 87.8 72 63.9
Nitab4.5_0000443g0110 Nicotiana tabacum HOM05D000247 ORTHO05D008926 3.9e-15 85.9 72 61.1
Nitab4.5_0007772g0020 Nicotiana tabacum HOM05D000247 ORTHO05D008926 3.9e-15 85.9 72 61.1
PGSC0003DMG402010449 Solanum tuberosum HOM05D000247 ORTHO05D008926 5.1e-15 85.5 72 59.7
TAR627G0960 Trochodendron aralioides HOM05D000247 ORTHO05D008926 5.1e-15 85.5 72 62.5
QL11p013075 Quercus lobata HOM05D000247 ORTHO05D008926 1.9e-14 83.6 287 31.0
Solyc02g068500.3 Solanum lycopersicum HOM05D000247 ORTHO05D008926 1.9e-14 83.6 72 59.7
Sopen02g017640 Solanum pennellii HOM05D000247 ORTHO05D008926 1.9e-14 83.6 72 59.7
CiPaw.09G073900 Carya illinoinensis HOM05D000247 ORTHO05D008926 3.3e-14 82.8 72 61.1
Peaxi162Scf00199g00089 Petunia axillaris HOM05D000247 ORTHO05D008926 4.3e-14 82.4 209 30.1
DCAR_007780 Daucus carota HOM05D000247 ORTHO05D008926 1.3e-13 80.9 72 58.3
Atru.chr10.414 Acer truncatum HOM05D000247 ORTHO05D008926 1.6e-13 80.5 72 55.6
GSVIVG01012129001 Vitis vinifera HOM05D000247 ORTHO05D008926 1.6e-13 80.5 72 56.9
GSVIVG01012130001 Vitis vinifera HOM05D000247 ORTHO05D008926 1.6e-13 80.5 72 56.9
MSTRG.7604 Avicennia marina HOM05D000247 ORTHO05D008926 2.1e-13 80.1 72 56.9
Manes.03G075166 Manihot esculenta HOM05D000247 ORTHO05D008926 2.1e-13 80.1 72 58.3
TWI38G1568 Tripterygium wilfordii HOM05D000247 ORTHO05D008926 2.1e-13 80.1 72 54.2
Ciclev10016549m.g Citrus clementina HOM05D000247 ORTHO05D008926 6.2e-13 78.6 72 55.6
Hma1.2p1_1207F.1_g267030 Hydrangea macrophylla HOM05D000247 ORTHO05D008926 6.2e-13 78.6 72 59.7
RcHm_v2.0_Chr5g0020681 Rosa chinensis HOM05D000247 ORTHO05D008926 8.2e-13 78.2 72 54.2
CANSAT35G1610 Cannabis sativa HOM05D000247 ORTHO05D008926 1.1e-12 77.8 72 56.9
FAN16G3275 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.1e-12 77.8 72 55.6
FAN25G3094 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.1e-12 77.8 72 55.6
FvH4_3g12700 Fragaria vesca HOM05D000247 ORTHO05D008926 1.4e-12 77.4 72 54.2
SGA_v2.0_scaffold298G47701 Striga asiatica HOM05D000247 ORTHO05D008926 2.4e-12 76.6 72 56.9
SalBow8G0825 Salvia bowleyana HOM05D032565 ORTHO05D008926 3.1e-12 76.3 72 56.9
Migut.M02000 Erythranthe guttata HOM05D000247 ORTHO05D008926 4.1e-12 75.9 72 55.6
Prupe.4G115800 Prunus persica HOM05D000247 ORTHO05D008926 4.1e-12 75.9 72 51.4
FAN16G1213 Fragaria x ananassa HOM05D000247 ORTHO05D008926 5.3e-12 75.5 72 52.8
MD10G1228900 Malus domestica HOM05D000247 ORTHO05D008926 5.3e-12 75.5 72 51.4
unitig_748.g8074 Utricularia gibba HOM05D000247 ORTHO05D008926 6.9e-12 75.1 72 54.2
SGA_v2.0_scaffold175G39349 Striga asiatica HOM05D000247 ORTHO05D008926 9.0e-12 74.7 75 53.3
Lsat_1_v5_gn_8_117960 Lactuca sativa HOM05D000247 ORTHO05D008926 1.5e-11 73.9 72 51.4
Aa31LG2G14990 Aethionema arabicum HOM05D000247 ORTHO05D008926 3.4e-11 72.8 72 47.2
BraA09t39048Z Brassica rapa HOM05D000247 ORTHO05D008926 3.4e-11 72.8 72 48.6
A09p35210 Brassica napus HOM05D000247 ORTHO05D008926 4.5e-11 72.4 72 48.6
C05p30180 Brassica napus HOM05D000247 ORTHO05D008926 4.5e-11 72.4 72 48.6
BolC5t31755H Brassica oleracea HOM05D000247 ORTHO05D008926 4.5e-11 72.4 72 48.6
HanXRQChr09g0258391 Helianthus annuus HOM05D000247 ORTHO05D008926 4.5e-11 72.4 72 51.4
MD17G1134000 Malus domestica HOM05D000247 ORTHO05D008926 4.5e-11 72.4 72 48.6
AL1G45430 Arabidopsis lyrata HOM05D000247 ORTHO05D008926 5.8e-11 72.0 72 45.8
AT1G31020 Arabidopsis thaliana HOM05D000247 ORTHO05D008926 5.8e-11 72.0 72 45.8
Cc09_g05440 Coffea canephora HOM05D000247 ORTHO05D008926 5.8e-11 72.0 72 51.4
Nn7g38276 Nelumbo nucifera HOM05D000247 ORTHO05D008926 5.8e-11 72.0 72 54.2
DCAR_001289 Daucus carota HOM05D000247 ORTHO05D008926 7.6e-11 71.6 72 52.8
BcaB07g32760 Brassica carinata HOM05D000267 ORTHO05D008926 1.0e-10 71.2 72 47.2
BcaC05g27133 Brassica carinata HOM05D000247 ORTHO05D008926 1.0e-10 71.2 72 47.2
Carub.0004s1670 Capsella rubella HOM05D000247 ORTHO05D008926 1.0e-10 71.2 72 45.8
Thhalv10017264m.g Eutrema salsugineum HOM05D000247 ORTHO05D008926 1.3e-10 70.9 72 48.6
BcaB06g28813 Brassica carinata HOM05D000247 ORTHO05D008926 1.7e-10 70.5 72 50.0
THA.LOC104798563 Tarenaya hassleriana HOM05D000247 ORTHO05D008926 1.7e-10 70.5 72 47.2
Dinv04337 Davidia involucrata HOM05D000247 ORTHO05D008926 2.2e-10 70.1 68 50.0
Sp4g17290 Schrenkiella parvula HOM05D000247 ORTHO05D008926 2.2e-10 70.1 72 48.6
CARHR030550 Cardamine hirsuta HOM05D000247 ORTHO05D008926 3.8e-10 69.3 72 47.2
Potri.001G159000 Populus trichocarpa HOM05D000247 ORTHO05D008926 3.8e-10 69.3 72 47.2
Sp1g26880 Schrenkiella parvula HOM05D000247 ORTHO05D008926 5.0e-10 68.9 72 45.8
Lj4g0027483 Lotus japonicus HOM05D000247 ORTHO05D008926 6.5e-10 68.6 72 50.0
AL4G31030 Arabidopsis lyrata HOM05D000247 ORTHO05D008926 8.4e-10 68.2 72 45.8
FAN21G2895 Fragaria x ananassa HOM05D000247 ORTHO05D008926 8.4e-10 68.2 67 47.8
Glyma.05G132600 Glycine max HOM05D000247 ORTHO05D008926 8.4e-10 68.2 72 50.0
arahy.Tifrunner.gnm1.ann1.LMJ0T6 Arachis hypogaea HOM05D000247 ORTHO05D008926 1.1e-09 67.8 67 50.7
arahy.Tifrunner.gnm1.ann1.N4QHWM Arachis hypogaea HOM05D000247 ORTHO05D008926 1.1e-09 67.8 67 50.7
Glyma.08G087100 Glycine max HOM05D000247 ORTHO05D008926 1.1e-09 67.8 72 51.4
HPP92_009500 Vanilla planifolia HOM05D000247 ORTHO05D008926 1.1e-09 67.8 72 48.6
Rhsim13G0129200 Rhododendron simsii HOM05D000247 ORTHO05D008926 1.4e-09 67.4 111 38.7
AT2G35010 Arabidopsis thaliana HOM05D000247 ORTHO05D008926 1.9e-09 67.0 72 44.4
MELO3C007026.2 Cucumis melo HOM05D000247 ORTHO05D008926 1.9e-09 67.0 72 47.2
BraA04t18174Z Brassica rapa HOM05D000247 ORTHO05D008926 2.5e-09 66.6 70 47.1
CARHR129170 Cardamine hirsuta HOM05D000247 ORTHO05D008926 3.2e-09 66.2 72 45.8
PSO675G8821 Papaver somniferum HOM05D000247 ORTHO05D008926 3.2e-09 66.2 86 39.5
Eucgr.D00028 Eucalyptus grandis HOM05D000247 ORTHO05D008926 4.2e-09 65.9 72 47.2
Thhalv10008976m.g Eutrema salsugineum HOM05D000247 ORTHO05D008926 4.2e-09 65.9 72 41.7
TPR.G31242 Trifolium pratense HOM05D000247 ORTHO05D008926 4.2e-09 65.9 68 48.5
Carub.0001s2941 Capsella rubella HOM05D000247 ORTHO05D008926 5.5e-09 65.5 72 43.1
BcaC02g07742 Brassica carinata HOM05D000247 ORTHO05D008926 7.1e-09 65.1 72 44.4
CDE06G1703 Ceratophyllum demersum HOM05D000247 ORTHO05D008926 7.1e-09 65.1 72 43.1
Lalb_Chr07g0188361 Lupinus albus HOM05D000247 ORTHO05D008926 7.1e-09 65.1 72 48.6
ClCG01G025600 Citrullus lanatus HOM05D000247 ORTHO05D008926 9.3e-09 64.7 213 28.2
Sed0006578 Sechium edule HOM05D000247 ORTHO05D008926 9.3e-09 64.7 72 45.8
Medtr4g094690 Medicago truncatula HOM05D000247 ORTHO05D008926 1.2e-08 64.3 72 47.2
MD05G1092600 Malus domestica HOM05D000247 ORTHO05D008926 1.6e-08 63.9 65 44.6
Phvul.002G190200 Phaseolus vulgaris HOM05D000247 ORTHO05D008926 1.6e-08 63.9 67 49.3
Psat7g088680 Pisum sativum HOM05D000247 ORTHO05D008926 1.6e-08 63.9 68 47.1
CsaV3_6G052830 Cucumis sativus L. HOM05D000247 ORTHO05D008926 2.1e-08 63.5 72 45.8
PSO541G6344 Papaver somniferum HOM05D000247 ORTHO05D008926 2.1e-08 63.5 72 47.2
PGR004G1671 Punica granatum HOM05D000247 ORTHO05D008926 3.5e-08 62.8 68 47.1
ATR0763G171 Amborella trichopoda HOM05D000247 ORTHO05D008926 1.8e-07 60.5 68 42.6
Sabra01G0132800 Salix brachista HOM05D000247 ORTHO05D008926 1.8e-07 60.5 69 40.6
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 3.0e-07 59.7 104 33.7
Thecc.02G276000 Theobroma cacao HOM05D000247 ORTHO05D008926 3.0e-07 59.7 72 43.1
Duzib251G0091 Durio zibethinus HOM05D000247 ORTHO05D008926 3.9e-07 59.3 68 39.7
Cpa.g.sc3102.2 Carica papaya HOM05D000247 ORTHO05D008926 5.1e-07 58.9 69 42.0
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 8.7e-07 58.2 104 33.7
SHI32269 Sapria himalayana HOM05D000247 ORTHO05D008926 8.7e-07 58.2 115 38.3
Sc24g0002990 Simmondsia chinensis HOM05D000247 ORTHO05D008926 3.3e-06 56.2 72 41.7
Gohir.A03G128000 Gossypium hirsutum HOM05D000247 ORTHO05D008926 5.7e-06 55.5 72 38.9
Os06g0665900 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D008926 5.7e-06 55.5 72 37.5
arahy.Tifrunner.gnm1.ann1.ZI5CY8 Arachis hypogaea HOM05D001920 ORTHO05D004895 7.4e-06 55.1 67 46.3
Aqoxy5G00005 Aquilegia oxysepala HOM05D000247 ORTHO05D008926 9.7e-06 54.7 70 45.7
Gorai.005G169900 Gossypium raimondii HOM05D000247 ORTHO05D008926 9.7e-06 54.7 72 38.9


User provided reference genes

Program Settings