Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 3.5e-115 418.3 213 100.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.4e-95 353.2 202 92.1
Cfa010488 Carpinus fangiana HOM05D022078 ORTHO05D024871 5.5e-36 155.2 93 83.9
Cfa010487 Carpinus fangiana HOM05D022078 ORTHO05D024871 2.2e-32 143.3 84 88.1
Cfa006046 Carpinus fangiana HOM05D022078 ORTHO05D024871 9.2e-31 137.9 84 86.9
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 4.9e-16 89.0 125 44.8
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.4e-15 87.4 56 80.4
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.2e-15 86.3 56 78.6
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.2e-14 84.3 56 76.8
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.6e-14 84.0 56 78.6
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 4.6e-14 82.4 121 42.1
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 6.0e-14 82.0 125 41.6
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 3.0e-13 79.7 125 40.8
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 6.6e-13 78.6 58 72.4
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 6.6e-13 78.6 58 72.4
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 6.6e-13 78.6 58 72.4
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.5e-12 76.6 60 68.3
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 3.3e-12 76.3 58 67.2
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 4.3e-12 75.9 58 69.0
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 4.3e-12 75.9 101 49.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 5.6e-12 75.5 57 66.7
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 9.5e-12 74.7 58 70.7
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.2e-11 74.3 58 63.8
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.6e-11 73.9 61 65.6
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.6e-11 73.9 58 65.5
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.1e-11 73.6 98 50.0
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.1e-11 73.6 58 67.2
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 2.1e-11 73.6 58 67.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.1e-11 73.6 58 67.2
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 3.6e-11 72.8 60 63.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.6e-11 72.8 58 67.2
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.6e-11 72.8 58 65.5
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.6e-11 72.8 58 65.5
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 3.6e-11 72.8 58 65.5
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 4.7e-11 72.4 57 63.2
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.1e-10 71.2 58 62.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.1e-10 71.2 58 62.1
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.1e-10 71.2 58 62.1
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.8e-10 70.5 58 63.8
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-10 70.5 57 63.2
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.8e-10 70.5 56 64.3
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.8e-10 70.5 96 41.7
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.3e-10 70.1 56 66.1
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 2.3e-10 70.1 58 62.1
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.3e-10 70.1 57 63.2
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.3e-10 70.1 58 63.8
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.1e-10 69.7 57 63.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.0e-10 69.3 58 63.8
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 5.2e-10 68.9 58 58.6
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 5.2e-10 68.9 58 58.6
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.2e-10 68.9 78 44.9
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 5.2e-10 68.9 67 61.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 6.8e-10 68.6 58 63.8
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 6.8e-10 68.6 58 63.8
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.8e-10 68.6 78 43.6
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.8e-10 68.6 78 43.6
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 6.8e-10 68.6 58 62.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 8.9e-10 68.2 99 45.5
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.9e-10 68.2 78 43.6
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.9e-10 68.2 78 43.6
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.9e-10 68.2 78 43.6
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.9e-10 68.2 78 43.6
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 8.9e-10 68.2 83 47.0
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 8.9e-10 68.2 57 61.4
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 8.9e-10 68.2 58 62.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.2e-09 67.8 98 43.9
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.2e-09 67.8 78 46.2
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-09 67.4 85 48.2
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.0e-09 67.0 83 45.8
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 2.0e-09 67.0 61 60.7
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.0e-09 67.0 124 36.3
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 3.4e-09 66.2 57 61.4
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 3.4e-09 66.2 58 58.6
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 3.4e-09 66.2 58 60.3
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 4.4e-09 65.9 58 62.1
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 4.4e-09 65.9 58 62.1
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.4e-09 65.9 78 42.3
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 4.4e-09 65.9 61 59.0
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 5.8e-09 65.5 90 46.7
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 5.8e-09 65.5 98 44.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 5.8e-09 65.5 58 58.6
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 5.8e-09 65.5 54 64.8
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 7.5e-09 65.1 98 42.9
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 7.5e-09 65.1 58 60.3
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 9.8e-09 64.7 60 58.3
CSS0036507 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-08 64.3 75 42.7
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.3e-08 64.3 58 55.2
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.3e-08 64.3 98 43.9
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.3e-08 64.3 61 57.4
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.7e-08 63.9 58 56.9
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.7e-08 63.9 62 50.0
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.7e-08 63.9 61 59.0
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-08 63.9 116 35.3
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.2e-08 63.5 58 60.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 2.9e-08 63.2 56 57.1
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.7e-08 62.8 62 53.2
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.7e-08 62.8 61 54.1
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.7e-08 62.8 58 56.9
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.4e-08 62.0 58 51.7
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.4e-08 62.0 96 36.5
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.4e-08 62.0 56 57.1
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 8.3e-08 61.6 120 35.8
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.1e-07 61.2 58 56.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.4e-07 60.8 99 41.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.9e-07 60.5 49 57.1
MBI02_g35833_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.9e-07 60.5 129 33.3
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.9e-07 60.5 131 30.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.4e-07 60.1 53 60.4
Rhsim04G0054800 Rhododendron simsii HOM05D001309 ORTHO05D000385 3.2e-07 59.7 90 37.8
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-07 59.7 122 35.2
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 4.1e-07 59.3 58 53.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 4.1e-07 59.3 62 51.6
Dinv04435 Davidia involucrata HOM05D001309 ORTHO05D013539 4.1e-07 59.3 97 37.1
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.1e-07 59.3 90 37.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 5.4e-07 58.9 60 51.7
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 5.4e-07 58.9 114 31.6
TAR623G0534 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.4e-07 58.9 108 37.0
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.1e-07 58.5 98 40.8
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.2e-06 57.8 120 33.3
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 1.2e-06 57.8 132 28.0
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.2e-06 57.8 62 48.4
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.2e-06 57.8 62 48.4
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.6e-06 57.4 88 43.2
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 2.1e-06 57.0 99 32.3
COL.COLO4_15867 Corchorus olitorius HOM05D001309 ORTHO05D004434 2.1e-06 57.0 120 30.8
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 2.7e-06 56.6 90 33.3
COL.COLO4_21802 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.7e-06 56.6 120 32.5
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.7e-06 56.6 120 32.5
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.7e-06 56.6 83 37.3
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.7e-06 56.6 131 33.6
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 2.7e-06 56.6 114 31.6
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 2.7e-06 56.6 58 53.4
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.5e-06 56.2 92 35.9
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 3.5e-06 56.2 122 32.0
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.5e-06 56.2 37 67.6
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 3.5e-06 56.2 83 34.9
Nitab4.5_0000999g0130 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.5e-06 56.2 122 34.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.6e-06 55.8 58 55.2
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.6e-06 55.8 114 31.6
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.6e-06 55.8 128 29.7
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.0e-06 55.5 125 32.0
Cfa005665 Carpinus fangiana HOM05D020682 ORTHO05D020353 7.8e-06 55.1 104 36.5
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 7.8e-06 55.1 100 33.0


User provided reference genes

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