Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 5.3e-183 644.8 318 100.0
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 1.5e-92 344.4 188 92.6
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 1.3e-64 251.5 183 74.3
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 4.6e-54 216.5 167 70.7
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 1.1e-52 211.8 178 62.9
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 4.1e-50 203.4 183 63.4
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 4.1e-50 203.4 178 64.0
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 6.9e-50 202.6 173 62.4
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.3e-48 198.4 152 66.4
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 8.5e-48 195.7 146 66.4
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 8.5e-48 195.7 160 66.2
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 4.2e-47 193.4 174 61.5
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 4.2e-47 193.4 174 61.5
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 9.4e-47 192.2 174 59.2
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.2e-46 191.8 175 61.1
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 3.6e-46 190.3 166 62.7
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 7.9e-46 189.1 145 66.2
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 7.9e-46 189.1 145 66.2
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 1.8e-45 188.0 169 61.5
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.3e-45 187.6 144 66.0
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 2.3e-45 187.6 131 69.5
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 3.0e-45 187.2 145 65.5
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 3.0e-45 187.2 165 63.6
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 3.9e-45 186.8 144 67.4
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 3.9e-45 186.8 158 65.8
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 5.2e-45 186.4 172 61.6
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 5.2e-45 186.4 172 61.6
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 6.7e-45 186.0 144 70.8
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 2.6e-44 184.1 152 64.5
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.3e-44 183.7 125 73.6
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 3.3e-44 183.7 184 59.2
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.4e-44 183.3 125 72.8
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 4.4e-44 183.3 206 52.4
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 4.8e-43 179.9 140 65.0
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 6.3e-43 179.5 174 55.7
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 1.1e-42 178.7 135 67.4
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.8e-42 177.9 146 61.6
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.4e-42 177.6 172 56.4
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 2.4e-42 177.6 134 67.9
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 4.1e-42 176.8 171 59.1
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 4.1e-42 176.8 135 67.4
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 5.3e-42 176.4 174 56.9
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 5.3e-42 176.4 151 64.2
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 7.0e-42 176.0 208 50.0
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 7.0e-42 176.0 132 65.2
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.6e-41 174.9 124 69.4
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 1.6e-41 174.9 124 69.4
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 3.5e-41 173.7 171 58.5
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 3.5e-41 173.7 149 62.4
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 7.7e-41 172.6 135 68.9
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 7.7e-41 172.6 143 62.2
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 2.2e-40 171.0 159 62.9
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 2.9e-40 170.6 132 67.4
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 3.8e-40 170.2 175 56.6
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 5.0e-40 169.9 143 62.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 5.0e-40 169.9 164 60.4
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 8.5e-40 169.1 146 63.0
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 1.1e-39 168.7 144 59.0
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 1.1e-39 168.7 144 59.0
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 2.5e-39 167.5 144 61.1
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 2.5e-39 167.5 143 59.4
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 5.5e-39 166.4 138 65.2
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 7.2e-39 166.0 142 63.4
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 7.2e-39 166.0 142 63.4
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 1.2e-38 165.2 120 68.3
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.2e-38 165.2 125 67.2
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 4.7e-38 163.3 148 60.8
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 3.0e-37 160.6 142 62.0
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 6.7e-37 159.5 151 57.6
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 2.0e-36 157.9 159 54.7
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.0e-36 157.9 170 54.1
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 2.0e-36 157.9 134 63.4
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 2.0e-36 157.9 150 55.3
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 4.4e-36 156.8 176 52.3
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 5.7e-36 156.4 144 58.3
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 9.7e-36 155.6 144 57.6
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 9.7e-36 155.6 144 57.6
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 2.8e-35 154.1 116 68.1
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 6.3e-35 152.9 114 66.7
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 6.3e-35 152.9 146 60.3
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 7.0e-34 149.4 164 54.3
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 1.2e-33 148.7 171 49.1
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 1.6e-33 148.3 110 70.9
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.6e-33 148.3 142 56.3
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 9.4e-31 139.0 110 67.3
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.6e-30 138.3 136 53.7
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.0e-29 135.6 79 82.3
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 1.8e-29 134.8 151 52.3
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.6e-28 131.0 107 63.6
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.2e-27 127.9 98 69.4
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.8e-26 124.8 79 75.9
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 2.4e-26 124.4 108 60.2
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 3.5e-25 120.6 66 87.9
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 4.5e-25 120.2 110 57.3
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 1.7e-24 118.2 177 42.4
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 4.2e-23 113.6 165 41.8
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.8e-22 110.9 91 63.7
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 4.7e-22 110.2 149 47.7
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 8.0e-22 109.4 91 62.6
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 2.4e-18 97.8 127 46.5
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 1.1e-10 72.4 187 29.9
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 1.4e-10 72.0 145 31.7
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 4.1e-10 70.5 102 39.2
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 2.0e-09 68.2 94 39.4
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 1.0e-08 65.9 51 66.7
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 9.5e-07 59.3 37 70.3


User provided reference genes

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