Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 0.0e+00 2523.4 1424 100.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 0.0e+00 2246.9 1425 89.7
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 0.0e+00 1649.4 1466 69.0
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1145.2 883 69.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 3.7e-269 932.6 1605 44.0
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 4.5e-267 925.6 1691 43.5
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.2e-265 918.3 1694 42.4
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.3e-250 870.2 1490 42.6
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.9e-250 869.8 967 54.4
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.1e-249 867.8 1717 40.1
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 4.3e-249 865.9 1620 43.1
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 7.5e-246 855.1 1551 43.3
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 4.6e-243 845.9 1516 43.7
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.9e-237 826.6 1535 43.1
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 6.2e-232 808.9 1484 46.2
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-231 807.7 1652 40.4
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 8.9e-231 805.1 1714 36.2
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.5e-227 793.1 1537 42.6
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 7.3e-225 785.4 1104 46.0
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 1.2e-224 784.6 1447 43.7
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.6e-224 784.3 1192 44.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 6.2e-224 782.3 1485 43.0
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.7e-221 774.2 1560 42.5
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.9e-220 770.8 1501 40.1
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 7.1e-220 768.8 1494 43.3
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.9e-213 746.9 1495 40.7
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 9.3e-212 741.9 1570 40.3
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.1e-211 740.7 1488 40.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 5.8e-206 722.6 1498 40.9
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 4.2e-204 716.5 1477 41.2
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 5.4e-204 716.1 1560 42.3
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 6.0e-203 712.6 882 49.7
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.3e-202 711.4 1159 42.4
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.4e-199 701.4 1574 41.2
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.1e-199 700.3 1542 41.2
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.9e-198 695.3 1546 41.2
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.2e-196 690.3 1554 40.5
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.3e-193 679.9 866 47.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 4.0e-191 673.3 1488 39.0
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 4.5e-190 669.8 1549 38.9
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 5.8e-190 669.5 1175 40.3
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 4.9e-189 666.4 1598 39.8
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 6.5e-189 666.0 1483 39.9
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.0e-186 658.7 1481 40.7
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.5e-182 644.8 1462 35.6
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 3.9e-178 630.2 856 46.7
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 2.2e-176 624.4 1494 35.1
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.2e-171 608.6 835 45.3
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.8e-167 594.7 1061 40.2
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 3.1e-167 594.0 718 49.0
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 4.4e-161 573.5 1514 35.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 9.7e-161 572.4 1466 35.5
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.1e-159 568.9 1201 36.8
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.7e-157 561.6 1474 35.3
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 5.2e-154 550.1 1199 36.8
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.0e-153 548.1 1217 36.6
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 2.6e-153 547.7 1573 36.0
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 9.7e-153 545.8 1473 36.4
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.7e-152 545.0 1479 38.8
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 3.5e-150 537.3 1106 37.3
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.6e-147 528.5 1559 33.6
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 8.8e-146 522.7 1509 34.9
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.5e-145 521.9 1467 33.9
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 5.4e-143 513.5 1459 33.0
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.6e-142 511.9 1460 33.1
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 3.5e-142 510.8 1434 34.7
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 2.3e-138 498.0 1441 35.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 5.2e-138 496.9 1441 35.1
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.8e-138 496.5 1101 37.6
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 2.6e-137 494.6 1444 32.8
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-136 492.3 1441 35.0
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-135 488.8 1433 33.4
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 9.2e-135 486.1 1435 32.4
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.5e-132 478.8 1438 32.3
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.9e-132 478.4 1497 35.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.7e-131 473.8 1635 30.9
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 8.0e-131 473.0 1509 35.0
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 7.5e-129 466.5 897 38.8
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 9.2e-127 459.5 1454 34.0
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.0e-125 456.1 820 38.7
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.7e-125 455.3 992 36.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 6.4e-120 436.8 1459 35.4
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 2.7e-118 431.4 1440 30.7
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 8.6e-117 426.4 1149 33.7
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 4.3e-116 424.1 1367 32.7
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 6.8e-114 416.8 1633 30.9
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.2e-112 411.8 983 33.7
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 9.5e-108 396.4 1145 30.8
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 4.7e-107 394.0 1433 28.4
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.1e-106 392.9 1257 35.2
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 5.2e-106 390.6 1145 30.8
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.3e-104 386.0 1069 30.8
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 3.8e-104 384.4 1099 31.6
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 4.9e-104 384.0 1137 29.6
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.2e-99 369.4 1185 31.9
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 2.4e-95 355.1 856 33.6
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.2e-94 352.8 813 33.8
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 2.5e-92 345.1 895 34.6
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 3.3e-92 344.7 815 33.9
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 6.9e-90 337.0 1449 29.9
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 4.9e-88 330.9 1508 28.1
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 4.6e-86 324.3 1579 27.9
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.6e-83 315.8 1020 36.1
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.3e-76 291.6 1757 25.4
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.3e-76 291.6 733 33.3
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.7e-72 279.3 237 61.2
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 6.5e-72 277.3 1185 30.8
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 4.2e-71 274.6 1509 30.0
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.6e-67 262.7 446 39.5
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.6e-67 262.7 446 39.5
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-66 259.6 446 39.2
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 7.4e-52 210.7 551 48.3
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 2.8e-51 208.8 1496 27.4
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 3.7e-51 208.4 289 42.6
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 4.1e-50 204.9 296 42.9
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 6.3e-43 181.0 525 31.4
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.1e-39 170.2 391 33.0
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.1e-39 170.2 526 31.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.2e-36 160.2 167 51.5
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 9.7e-36 157.1 540 46.1
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 8.2e-35 154.1 693 25.7
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.8e-34 152.9 336 35.1
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 5.9e-33 147.9 335 34.9
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.7e-32 146.4 1029 23.7
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 7.2e-31 141.0 336 34.2
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 2.1e-30 139.4 470 31.1
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.7e-30 139.0 283 36.7
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 5.7e-28 131.3 135 57.0
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 1.8e-26 126.3 348 29.3
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.6e-25 123.2 1113 22.5
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.6e-25 123.2 150 42.7
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.7e-25 122.5 134 50.7
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.3e-24 120.2 120 54.2
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 3.0e-21 109.0 526 34.2
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.7e-19 103.2 113 54.9
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 3.1e-18 99.0 325 32.9
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 7.0e-18 97.8 209 32.5
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 3.5e-17 95.5 180 37.2
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 2.3e-16 92.8 126 45.2
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 8.6e-16 90.9 145 40.0
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.1e-15 90.5 149 42.3
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.9e-15 89.7 122 45.1
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 1.2e-14 87.0 87 54.0
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.7e-11 75.5 347 25.9
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 6.4e-11 74.7 196 34.7
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 2.0e-09 69.7 82 43.9
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.3e-08 67.0 158 38.6
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 1.3e-08 67.0 68 57.4
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 1.5e-07 63.5 73 53.4
CSS0045402 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.9e-07 63.2 112 40.2
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 3.3e-07 62.4 223 32.7
CSS0038484 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 4.3e-07 62.0 112 40.2
CSS0031745 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 5.6e-07 61.6 111 39.6
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 5.6e-07 61.6 470 34.9
SHI24812 Sapria himalayana HOM05D005129 ORTHO05D005585 1.2e-06 60.5 38 76.3
MELO3C033939.2 Cucumis melo HOM05D018160 ORTHO05D034961 1.6e-06 60.1 53 50.9
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.8e-06 59.3 99 36.4
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.8e-06 59.3 99 36.4
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.8e-06 59.3 99 36.4


User provided reference genes

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