Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 3.8e-87 324.7 155 100.0
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.5e-75 286.2 155 89.7
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 5.4e-73 277.7 153 88.2
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.3e-71 272.3 152 85.5
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.3e-71 272.3 167 80.2
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 2.3e-71 272.3 153 86.3
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.6e-71 270.8 152 84.9
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 1.5e-70 269.6 155 83.9
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.5e-70 268.9 153 84.3
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 3.3e-70 268.5 155 83.2
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.3e-70 268.5 153 85.0
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 4.3e-70 268.1 152 84.9
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.3e-70 268.1 152 84.9
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 5.6e-70 267.7 153 83.0
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 7.3e-70 267.3 153 83.7
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 9.5e-70 266.9 155 83.2
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 9.5e-70 266.9 153 83.7
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 9.5e-70 266.9 155 81.3
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.6e-69 266.2 153 82.4
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.6e-69 266.2 168 79.8
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.1e-69 265.8 153 82.4
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 2.1e-69 265.8 151 84.1
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 2.1e-69 265.8 154 81.8
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 2.1e-69 265.8 153 81.7
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 2.8e-69 265.4 153 82.4
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.8e-69 265.4 155 80.6
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.7e-69 264.6 155 80.6
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 6.2e-69 264.2 153 82.4
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 8.0e-69 263.8 153 81.0
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.1e-68 263.5 155 81.9
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.1e-68 263.5 155 81.9
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.8e-68 262.7 152 83.6
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 1.8e-68 262.7 152 83.6
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.8e-68 262.7 152 82.2
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.8e-68 262.7 155 80.0
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.8e-68 262.7 164 79.9
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 2.3e-68 262.3 153 80.4
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.3e-68 262.3 153 80.4
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.3e-68 262.3 153 80.4
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.3e-68 262.3 151 82.8
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 3.1e-68 261.9 151 82.1
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.1e-68 261.9 153 81.7
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 3.1e-68 261.9 152 82.2
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 4.0e-68 261.5 152 80.3
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 4.0e-68 261.5 152 82.9
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 5.2e-68 261.2 152 82.9
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 6.8e-68 260.8 155 81.9
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 6.8e-68 260.8 153 81.0
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.2e-67 260.0 154 81.8
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.2e-67 260.0 160 78.8
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.2e-67 260.0 160 78.8
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 3.4e-67 258.5 153 79.1
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 3.4e-67 258.5 152 80.9
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.4e-67 258.1 151 82.8
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 5.8e-67 257.7 152 80.9
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 7.5e-67 257.3 152 80.9
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 9.8e-67 256.9 152 80.9
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 9.8e-67 256.9 152 80.3
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.3e-66 256.5 172 74.4
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 1.3e-66 256.5 151 80.1
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 1.3e-66 256.5 152 78.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 1.7e-66 256.1 150 80.7
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 1.7e-66 256.1 164 77.4
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.2e-66 255.8 153 79.7
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 2.2e-66 255.8 154 79.2
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.9e-66 255.4 153 80.4
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 2.9e-66 255.4 151 81.5
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 2.9e-66 255.4 151 82.1
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 4.9e-66 254.6 150 80.0
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 4.9e-66 254.6 153 77.8
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 4.9e-66 254.6 151 80.8
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 6.4e-66 254.2 154 79.2
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 8.3e-66 253.8 151 80.8
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 8.3e-66 253.8 146 82.9
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.4e-65 253.1 151 80.8
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-65 253.1 151 80.1
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.4e-65 253.1 151 80.1
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.4e-65 252.3 151 80.1
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 2.4e-65 252.3 150 78.7
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 4.1e-65 251.5 151 79.5
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 4.1e-65 251.5 151 79.5
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 4.1e-65 251.5 151 79.5
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 5.4e-65 251.1 151 79.5
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 5.4e-65 251.1 151 78.1
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.6e-64 249.6 152 78.9
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 2.1e-64 249.2 165 72.1
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.0e-63 246.9 147 82.3
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.0e-63 246.9 152 76.3
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.0e-63 246.9 151 78.8
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.0e-63 245.4 152 75.0
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 3.0e-63 245.4 150 78.7
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 3.9e-63 245.0 165 70.9
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.9e-63 245.0 152 77.0
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 5.1e-63 244.6 151 76.2
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 6.6e-63 244.2 152 73.7
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 8.6e-63 243.8 164 70.7
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 8.6e-63 243.8 164 70.7
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 8.6e-63 243.8 164 70.7
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 8.6e-63 243.8 164 70.7
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 1.1e-62 243.4 164 70.1
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.1e-62 243.4 165 70.3
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.1e-62 243.4 165 70.3
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.5e-62 243.0 164 70.7
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 1.5e-62 243.0 151 75.5
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.5e-62 243.0 150 77.3
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 1.9e-62 242.7 152 74.3
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 2.5e-62 242.3 152 74.3
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.5e-62 242.3 137 83.9
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.5e-62 242.3 152 75.7
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.5e-62 242.3 151 76.2
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 3.3e-62 241.9 153 73.9
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 3.3e-62 241.9 165 70.3
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 3.3e-62 241.9 165 70.3
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 3.3e-62 241.9 165 70.3
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.3e-62 241.9 150 77.3
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 3.3e-62 241.9 152 73.0
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 4.3e-62 241.5 164 70.1
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 5.6e-62 241.1 152 73.0
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 5.6e-62 241.1 152 73.0
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 5.6e-62 241.1 152 73.0
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 7.3e-62 240.7 165 69.1
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 2.1e-61 239.2 152 73.7
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 2.8e-61 238.8 152 76.3
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 6.2e-61 237.7 121 89.3
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 6.2e-61 237.7 191 64.4
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 6.2e-61 237.7 152 71.1
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 6.2e-61 237.7 190 64.7
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.1e-60 236.9 135 84.4
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.8e-60 236.1 148 74.3
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 1.8e-60 236.1 153 74.5
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.3e-60 235.7 137 81.0
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 3.1e-60 235.3 151 73.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.1e-60 235.3 151 74.2
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.2e-60 234.6 152 74.3
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 8.9e-60 233.8 151 73.5
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 2.0e-59 232.6 151 72.2
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 2.6e-59 232.3 141 78.7
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 1.1e-57 226.9 152 69.7
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.9e-57 226.1 135 81.5
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 7.1e-57 224.2 171 67.3
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.1e-56 222.6 136 78.7
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.6e-56 221.5 135 79.3
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.0e-55 220.3 151 66.9
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 3.9e-55 218.4 136 74.3
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.9e-54 216.1 135 77.0
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 5.6e-54 214.5 154 66.9
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.6e-53 213.0 154 66.2
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.6e-53 213.0 137 77.4
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 3.1e-52 208.8 135 72.6
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 3.1e-52 208.8 118 85.6
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 8.9e-52 207.2 134 72.4
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.9e-49 199.5 118 79.7
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-48 196.8 134 65.7
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.2e-48 196.8 146 62.3
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.7e-47 193.0 154 59.1
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.1e-46 190.3 118 76.3
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 6.2e-45 184.5 151 60.3
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 3.8e-42 175.3 135 58.5
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 3.8e-42 175.3 89 89.9
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.4e-41 173.3 117 71.8
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.0e-39 167.2 145 61.4
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 7.3e-38 161.0 106 75.5
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-36 156.4 108 75.0
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.3e-31 140.2 69 89.9
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 1.5e-30 136.7 88 78.4
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 3.3e-30 135.6 120 60.0
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.3e-29 133.7 71 84.5
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.6e-29 133.3 89 76.4
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 6.7e-23 111.3 64 82.8
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.7e-18 96.7 44 90.9
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 2.7e-16 89.4 79 63.3
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.2e-13 77.8 58 65.5
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.0e-10 70.9 37 81.1
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 1.3e-10 70.5 30 96.7
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 1.7e-10 70.1 56 64.3
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 2.2e-10 69.7 116 37.9
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 4.2e-09 65.5 39 71.8
MBI17_g19514_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.3e-07 59.7 37 73.0


User provided reference genes

Program Settings