Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05677 Corylus avellana HOM05D002205 ORTHO05D017586 1.3e-63 246.1 112 100.0
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 7.4e-24 114.0 49 100.0
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 1.5e-19 99.8 48 85.4
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 1.5e-19 99.8 49 87.8
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 1.9e-19 99.4 48 85.4
COL.COLO4_31010 Corchorus olitorius HOM05D002205 ORTHO05D004847 1.9e-19 99.4 58 74.1
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 1.9e-19 99.4 49 81.6
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 1.9e-19 99.4 48 85.4
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 3.2e-19 98.6 49 83.7
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 3.2e-19 98.6 48 83.3
Gohir.A06G139900 Gossypium hirsutum HOM05D002205 ORTHO05D004847 4.2e-19 98.2 48 85.4
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 4.2e-19 98.2 48 85.4
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 4.2e-19 98.2 48 85.4
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 5.5e-19 97.8 49 81.6
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 5.5e-19 97.8 49 81.6
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 7.2e-19 97.4 48 83.3
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 9.4e-19 97.1 75 58.7
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 1.2e-18 96.7 48 81.2
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 1.2e-18 96.7 48 83.3
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.6e-18 96.3 49 79.6
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 1.6e-18 96.3 48 83.3
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 2.1e-18 95.9 48 79.2
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 2.1e-18 95.9 48 81.2
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 2.1e-18 95.9 48 81.2
Atru.chr10.1082 Acer truncatum HOM05D002205 ORTHO05D004847 2.7e-18 95.5 48 79.2
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 2.7e-18 95.5 48 79.2
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 2.7e-18 95.5 49 77.6
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 3.6e-18 95.1 49 79.6
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 3.6e-18 95.1 48 83.3
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 4.7e-18 94.7 48 79.2
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 4.7e-18 94.7 48 79.2
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 4.7e-18 94.7 48 79.2
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 4.7e-18 94.7 49 77.6
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 4.7e-18 94.7 48 81.2
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 4.7e-18 94.7 48 77.1
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 4.7e-18 94.7 48 79.2
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 6.1e-18 94.4 48 77.1
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 6.1e-18 94.4 48 81.2
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 6.1e-18 94.4 48 79.2
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 6.1e-18 94.4 48 79.2
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 6.1e-18 94.4 48 79.2
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 8.0e-18 94.0 48 77.1
Eucgr.D00270 Eucalyptus grandis HOM05D002205 ORTHO05D004847 8.0e-18 94.0 49 79.6
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 8.0e-18 94.0 49 77.6
TWI09G0418 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 8.0e-18 94.0 47 80.9
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 1.0e-17 93.6 48 79.2
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 1.0e-17 93.6 48 79.2
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 1.0e-17 93.6 48 77.1
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 1.0e-17 93.6 49 75.5
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 1.0e-17 93.6 48 75.0
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 1.0e-17 93.6 48 79.2
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 1.0e-17 93.6 48 79.2
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 1.4e-17 93.2 48 77.1
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 1.4e-17 93.2 48 75.0
Migut.K01167 Erythranthe guttata HOM05D002205 ORTHO05D004847 1.8e-17 92.8 48 77.1
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.8e-17 92.8 48 79.2
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 1.8e-17 92.8 48 79.2
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 1.8e-17 92.8 48 79.2
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 1.8e-17 92.8 48 77.1
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 1.8e-17 92.8 49 75.5
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 2.3e-17 92.4 48 77.1
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 2.3e-17 92.4 49 73.5
VMungo0251G1393 Vigna mungo HOM05D002205 ORTHO05D004847 2.3e-17 92.4 48 77.1
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 3.0e-17 92.0 48 75.0
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 3.0e-17 92.0 48 75.0
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 3.0e-17 92.0 49 75.5
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 4.0e-17 91.7 49 75.5
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 5.2e-17 91.3 48 77.1
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 5.2e-17 91.3 49 73.5
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 5.2e-17 91.3 48 75.0
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 5.2e-17 91.3 49 73.5
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 5.2e-17 91.3 48 77.1
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 5.2e-17 91.3 49 77.6
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 5.2e-17 91.3 49 75.5
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 6.7e-17 90.9 48 75.0
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 6.7e-17 90.9 48 77.1
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 6.7e-17 90.9 48 77.1
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 8.8e-17 90.5 48 77.1
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 8.8e-17 90.5 48 77.1
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 8.8e-17 90.5 48 77.1
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 8.8e-17 90.5 48 79.2
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 1.2e-16 90.1 48 75.0
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 1.2e-16 90.1 48 75.0
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 1.2e-16 90.1 48 75.0
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 1.2e-16 90.1 48 75.0
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 1.5e-16 89.7 48 72.9
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 1.5e-16 89.7 48 75.0
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 1.5e-16 89.7 48 75.0
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 1.5e-16 89.7 49 73.5
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 1.5e-16 89.7 49 73.5
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 2.0e-16 89.4 48 72.9
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 2.0e-16 89.4 49 71.4
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 2.6e-16 89.0 49 71.4
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 2.6e-16 89.0 48 75.0
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 3.3e-16 88.6 48 72.9
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 3.3e-16 88.6 49 71.4
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 3.3e-16 88.6 49 69.4
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 3.3e-16 88.6 49 69.4
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 5.7e-16 87.8 48 70.8
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 5.7e-16 87.8 48 75.0
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 5.7e-16 87.8 48 77.1
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 7.5e-16 87.4 46 76.1
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 1.3e-15 86.7 49 69.4
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.3e-15 86.7 67 59.7
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 1.7e-15 86.3 49 67.3
Hund17750 Selenicereus undatus HOM05D002205 ORTHO05D004847 1.7e-15 86.3 49 71.4
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 2.8e-15 85.5 48 72.9
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 3.7e-15 85.1 48 70.8
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 4.8e-15 84.7 49 67.3
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 8.2e-15 84.0 49 67.3
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea HOM05D002205 ORTHO05D004847 1.1e-14 83.6 48 68.8
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea HOM05D002205 ORTHO05D004847 1.1e-14 83.6 48 68.8
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 5.3e-14 81.3 45 75.6
Haze_05679 Corylus avellana HOM05D002205 ORTHO05D017586 9.1e-14 80.5 38 94.7
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 1.6e-13 79.7 49 63.3
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 5.9e-13 77.8 48 62.5
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 1.0e-12 77.0 48 60.4
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 1.0e-12 77.0 62 53.2
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 2.9e-12 75.5 48 62.5
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 2.9e-12 75.5 48 62.5
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 2.9e-12 75.5 40 75.0
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 3.8e-12 75.1 48 62.5
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 3.8e-12 75.1 48 62.5
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 1.5e-11 73.2 48 58.3
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 1.5e-11 73.2 48 58.3
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 1.5e-11 73.2 48 58.3
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 1.5e-11 73.2 48 58.3
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 1.9e-11 72.8 48 60.4
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 2.5e-11 72.4 48 58.3
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 4.2e-11 71.6 48 56.2
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 4.2e-11 71.6 48 56.2
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 4.2e-11 71.6 48 56.2
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 4.2e-11 71.6 48 56.2
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 7.2e-11 70.9 48 56.2
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 7.2e-11 70.9 76 44.7
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 9.4e-11 70.5 48 64.6
AagrBONN_evm.TU.Sc2ySwM_344.1912 Anthoceros agrestis HOM05D002205 ORTHO05D004847 1.6e-10 69.7 49 59.2
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 1.6e-10 69.7 43 67.4
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 2.1e-10 69.3 47 66.0
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 2.7e-10 68.9 48 56.2
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 3.6e-10 68.6 40 70.0
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 3.6e-10 68.6 47 55.3
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 4.7e-10 68.2 43 67.4
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 8.0e-10 67.4 48 54.2
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 1.0e-09 67.0 38 73.7
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 2.3e-09 65.9 43 62.8
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 2.3e-09 65.9 48 52.1
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 2.3e-09 65.9 43 65.1
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 6.8e-09 64.3 36 72.2
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 6.8e-09 64.3 36 72.2
Pp3c3_9110 Physcomitrium patens HOM05D002205 ORTHO05D004847 2.0e-08 62.8 55 45.5
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 1.3e-07 60.1 36 66.7
AUR62002680 Chenopodium quinoa HOM05D002205 ORTHO05D004847 4.8e-07 58.2 31 77.4
PRCOL_00004844 Prasinoderma coloniale HOM05D002205 ORTHO05D004847 1.8e-06 56.2 43 53.5
Haze_15964 Corylus avellana HOM05D002205 ORTHO05D008905 9.1e-06 53.9 45 51.1
Duzib235G0548 Durio zibethinus HOM05D002205 ORTHO05D008905 9.1e-06 53.9 48 50.0
Hma1.2p1_0388F.1_g142440 Hydrangea macrophylla HOM05D002205 ORTHO05D008905 9.1e-06 53.9 45 51.1
Hma1.2p1_2617F.1_g325510 Hydrangea macrophylla HOM05D002205 ORTHO05D008905 9.1e-06 53.9 45 51.1
QL05p012040 Quercus lobata HOM05D002205 ORTHO05D008905 9.1e-06 53.9 45 51.1
RcHm_v2.0_Chr2g0143471 Rosa chinensis HOM05D002205 ORTHO05D008905 9.1e-06 53.9 45 51.1


User provided reference genes

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