Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 9.9e-29 129.8 85 100.0
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 9.7e-16 86.7 91 72.5
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 2.8e-15 85.1 85 62.4
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 6.3e-15 84.0 86 57.0
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 9.0e-14 80.1 80 60.0
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.2e-13 79.7 85 52.9
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.2e-13 79.7 85 52.9
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.0e-13 79.0 80 58.8
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 2.6e-13 78.6 99 63.6
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 4.5e-13 77.8 90 52.2
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.9e-13 77.4 84 52.4
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.0e-12 76.6 86 68.6
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.3e-12 76.3 86 51.2
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 2.2e-12 75.5 85 49.4
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.9e-12 75.1 80 53.8
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 2.9e-12 75.1 82 56.1
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.9e-12 75.1 82 64.6
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 3.8e-12 74.7 82 61.0
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.0e-12 74.3 85 50.6
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.0e-12 74.3 85 50.6
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 6.5e-12 73.9 91 58.2
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 8.5e-12 73.6 95 56.8
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.5e-12 73.6 80 55.0
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 8.5e-12 73.6 83 50.6
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-11 73.2 85 47.1
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 1.1e-11 73.2 102 45.1
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.4e-11 72.8 91 57.1
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.9e-11 72.4 95 57.9
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 2.5e-11 72.0 87 49.4
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 3.2e-11 71.6 90 55.6
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 4.2e-11 71.2 93 47.3
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 5.5e-11 70.9 95 45.3
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 9.4e-11 70.1 91 56.0
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 9.4e-11 70.1 91 56.0
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 9.4e-11 70.1 92 50.0
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 9.4e-11 70.1 83 48.2
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.2e-10 69.7 104 55.8
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 1.2e-10 69.7 91 46.2
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.2e-10 69.7 92 45.7
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 1.2e-10 69.7 84 67.9
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.1e-10 68.9 91 45.1
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.1e-10 68.9 91 54.9
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 2.1e-10 68.9 89 66.3
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.7e-10 68.6 90 43.3
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 2.7e-10 68.6 91 61.5
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.7e-10 68.6 99 59.6
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 4.6e-10 67.8 91 58.2
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.0e-09 66.6 87 47.1
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.4e-09 66.2 82 47.6
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 1.8e-09 65.9 108 38.9
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.8e-09 65.9 86 50.0
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.3e-09 65.5 79 48.1
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 2.3e-09 65.5 95 43.2
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 3.0e-09 65.1 84 63.1
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 3.0e-09 65.1 42 76.2
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 3.9e-09 64.7 105 40.0
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 3.9e-09 64.7 42 73.8
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 3.9e-09 64.7 95 54.7
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 3.9e-09 64.7 41 78.0
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 5.1e-09 64.3 94 40.4
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 6.7e-09 63.9 102 56.9
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 6.7e-09 63.9 105 40.0
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 6.7e-09 63.9 79 68.4
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 6.7e-09 63.9 95 52.6
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 8.8e-09 63.5 95 45.3
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-08 63.2 84 46.4
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.5e-08 62.0 84 45.2
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.5e-08 62.0 91 46.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 3.3e-08 61.6 91 51.6
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 4.3e-08 61.2 47 70.2
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 5.7e-08 60.8 81 44.4
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 5.7e-08 60.8 92 43.5
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 5.7e-08 60.8 92 41.3
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 7.4e-08 60.5 85 43.5
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 7.4e-08 60.5 44 65.9
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 7.4e-08 60.5 91 45.1
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 7.4e-08 60.5 85 41.2
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 9.7e-08 60.1 40 77.5
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 9.7e-08 60.1 93 40.9
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.3e-07 59.7 98 40.8
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.7e-07 59.3 91 40.7
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 2.2e-07 58.9 41 65.9
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 2.2e-07 58.9 44 63.6
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 2.8e-07 58.5 47 63.8
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 3.7e-07 58.2 41 68.3
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 4.8e-07 57.8 41 65.9
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 4.8e-07 57.8 88 40.9
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 6.3e-07 57.4 41 65.9
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 8.2e-07 57.0 41 68.3
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 8.2e-07 57.0 41 68.3
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.1e-06 56.6 41 63.4
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 1.1e-06 56.6 92 39.1
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.4e-06 56.2 41 65.9
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 1.8e-06 55.8 41 65.9
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 1.8e-06 55.8 41 65.9
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 1.8e-06 55.8 41 65.9
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 1.8e-06 55.8 41 65.9
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.8e-06 55.8 41 65.9
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.8e-06 55.8 41 68.3
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.4e-06 55.5 47 53.2
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 3.1e-06 55.1 38 65.8
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 4.1e-06 54.7 39 69.2
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 5.3e-06 54.3 38 71.1
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 6.9e-06 53.9 40 65.0


User provided reference genes

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