Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.7e-111 406.0 200 100.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 6.0e-101 370.9 191 95.3
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.0e-100 370.2 191 95.3
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.3e-100 369.8 191 95.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 3.9e-100 368.2 191 95.3
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 5.1e-100 367.9 191 93.7
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 5.1e-100 367.9 191 93.7
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 6.7e-100 367.5 191 94.8
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 6.7e-100 367.5 191 95.3
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.7e-100 367.5 191 95.3
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.7e-100 367.5 191 95.3
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 6.7e-100 367.5 191 94.8
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 6.7e-100 367.5 191 93.7
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 6.7e-100 367.5 189 95.2
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 8.7e-100 367.1 191 93.2
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.1e-99 366.7 191 93.7
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.5e-99 366.3 191 94.2
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.5e-99 366.3 189 95.2
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.5e-99 366.3 190 93.7
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.9e-99 365.9 191 94.2
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.9e-99 365.9 189 94.7
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.9e-99 365.9 191 94.8
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.9e-99 365.9 191 93.7
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 2.5e-99 365.5 191 92.7
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.5e-99 365.5 191 93.7
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.3e-99 365.2 191 93.7
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.3e-99 365.2 191 94.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.3e-99 365.2 191 94.8
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.3e-99 364.8 191 94.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 4.3e-99 364.8 191 94.8
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.3e-99 364.8 189 94.7
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 5.6e-99 364.4 186 96.8
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 5.6e-99 364.4 191 93.7
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 7.4e-99 364.0 191 92.1
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 9.6e-99 363.6 191 94.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 9.6e-99 363.6 188 93.6
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 9.6e-99 363.6 191 93.2
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.3e-98 363.2 191 93.2
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 1.3e-98 363.2 191 93.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.3e-98 363.2 191 93.7
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.3e-98 363.2 191 94.2
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.3e-98 363.2 191 94.2
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.3e-98 363.2 191 93.7
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.6e-98 362.8 189 94.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 1.6e-98 362.8 191 93.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.1e-98 362.5 191 92.7
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 2.1e-98 362.5 191 92.7
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 2.1e-98 362.5 191 92.7
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.1e-98 362.5 191 92.7
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.8e-98 362.1 191 94.2
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 3.7e-98 361.7 191 93.7
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.7e-98 361.7 191 92.7
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 4.8e-98 361.3 191 92.1
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 4.8e-98 361.3 191 92.7
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 4.8e-98 361.3 191 92.1
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 6.2e-98 360.9 191 92.7
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 6.2e-98 360.9 191 92.7
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 91.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 92.1
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 92.1
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 92.1
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 92.1
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 93.2
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 8.2e-98 360.5 191 92.1
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.4e-97 359.8 191 91.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.4e-97 359.8 191 92.1
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.8e-97 359.4 191 91.1
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-97 359.4 191 92.1
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.1e-97 358.6 191 92.1
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.1e-97 358.6 191 91.6
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.1e-97 358.6 202 89.6
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 3.1e-97 358.6 188 93.1
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 3.1e-97 358.6 191 91.6
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 5.3e-97 357.8 191 92.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 5.3e-97 357.8 191 92.1
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 6.9e-97 357.5 191 91.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 6.9e-97 357.5 191 93.2
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 9.0e-97 357.1 188 92.0
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.5e-96 356.3 191 92.7
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.5e-96 356.3 191 91.1
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.5e-96 356.3 191 91.1
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 2.0e-96 355.9 191 91.1
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 2.0e-96 355.9 191 91.1
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 3.4e-96 355.1 188 91.5
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 4.5e-96 354.8 189 91.0
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.6e-96 354.0 185 93.5
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.0e-95 353.6 189 91.5
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.7e-95 352.8 191 91.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 1.7e-95 352.8 191 90.6
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.7e-95 352.8 191 89.0
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 2.9e-95 352.1 189 92.1
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.8e-95 351.7 190 89.5
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 8.4e-95 350.5 191 90.6
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 6.7e-92 340.9 191 88.0
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.1e-89 333.6 255 70.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 6.9e-89 330.9 171 94.7
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 6.9e-89 330.9 189 85.7
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 9.0e-89 330.5 171 93.6
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.2e-88 330.1 191 82.2
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.4e-88 328.6 171 93.0
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.7e-87 326.2 182 86.3
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 3.8e-87 325.1 171 92.4
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 5.0e-87 324.7 189 84.1
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.4e-86 323.2 168 93.5
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.4e-86 323.2 181 89.0
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 9.3e-86 320.5 164 97.0
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 8.2e-82 307.4 183 84.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.4e-78 293.9 168 87.5
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 7.9e-77 290.8 185 76.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-76 290.0 168 86.9
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-74 283.5 164 85.4
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 3.1e-73 278.9 145 94.5
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 9.1e-73 277.3 158 89.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.2e-70 267.7 204 69.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 7.2e-70 267.7 190 70.0
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.1e-69 266.2 147 89.1
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 7.9e-69 264.2 155 85.8
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 6.7e-68 261.2 155 85.2
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 6.3e-66 254.6 156 81.4
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 6.1e-61 238.0 148 81.1
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 6.1e-53 211.5 141 76.6
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-52 210.3 151 72.8
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.5e-48 195.7 103 94.2
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.5e-46 190.3 180 53.9
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.2e-42 176.4 89 96.6
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 1.8e-41 173.3 93 89.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.9e-39 166.0 167 56.9
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.8e-36 154.8 113 74.3
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 6.0e-32 141.7 76 92.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.4e-28 130.6 135 55.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 3.4e-27 125.9 72 84.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 3.2e-25 119.4 93 64.5
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 5.1e-15 85.5 46 82.6


User provided reference genes

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