Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.6e-141 505.4 257 100.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.7e-121 437.6 257 88.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 5.2e-97 358.2 257 73.5
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.5e-96 356.7 256 70.3
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 7.5e-96 354.4 257 71.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 8.3e-95 350.9 256 70.7
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.2e-93 347.1 257 69.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 7.8e-93 344.4 257 70.4
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.1e-91 340.5 257 68.5
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.5e-91 340.1 257 68.5
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.3e-91 339.0 257 69.6
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.5e-91 337.4 258 68.2
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.5e-91 337.4 257 70.8
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.8e-90 335.9 258 67.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.8e-90 335.9 258 67.4
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.2e-90 334.7 257 67.7
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.0e-89 334.0 258 69.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.0e-89 334.0 257 67.3
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 5.2e-89 331.6 257 66.5
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.0e-88 329.7 258 65.5
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.6e-88 329.3 244 70.5
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.4e-88 328.9 240 70.0
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.2e-87 326.2 257 66.5
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.9e-87 325.9 258 67.8
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.7e-87 325.5 258 64.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.9e-87 325.1 257 66.9
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 6.4e-87 324.7 258 65.5
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.1e-86 323.9 257 66.1
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.9e-86 323.2 240 70.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.9e-86 323.2 244 70.1
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.9e-86 323.2 257 66.1
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 2.4e-86 322.8 258 63.6
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 2.4e-86 322.8 258 66.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.2e-86 322.4 258 65.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.1e-86 322.0 258 67.1
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 5.4e-86 321.6 258 64.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 5.4e-86 321.6 258 65.9
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 5.4e-86 321.6 257 65.8
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 5.4e-86 321.6 257 65.8
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 5.4e-86 321.6 257 63.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.6e-85 320.1 257 65.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 2.0e-85 319.7 314 57.0
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 2.0e-85 319.7 257 63.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.6e-85 318.5 247 66.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 6.0e-85 318.2 258 61.6
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 6.0e-85 318.2 257 64.6
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 7.8e-85 317.8 247 67.2
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 7.8e-85 317.8 257 64.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 7.8e-85 317.8 257 63.4
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 1.0e-84 317.4 257 64.6
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.0e-84 317.4 257 64.6
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.0e-84 317.4 257 64.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.0e-84 317.4 249 69.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.0e-84 317.4 246 66.3
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-84 316.2 256 68.0
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.0e-84 315.8 257 64.6
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 3.0e-84 315.8 256 67.6
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 3.9e-84 315.5 258 63.6
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 3.9e-84 315.5 258 63.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.9e-84 315.5 259 63.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.9e-84 315.5 257 65.0
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.9e-84 315.5 256 68.0
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.6e-84 314.3 258 62.0
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 1.1e-83 313.9 243 67.5
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 3.3e-83 312.4 259 62.5
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 4.3e-83 312.0 248 65.3
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.1e-82 309.7 241 67.6
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.1e-82 309.7 232 68.1
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.8e-82 309.3 237 67.9
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.7e-82 308.5 231 67.1
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.7e-82 308.5 233 69.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 6.2e-82 308.1 234 67.5
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 6.2e-82 308.1 251 63.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 8.1e-82 307.8 259 61.8
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-81 307.0 247 64.0
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.4e-81 307.0 251 64.1
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.8e-81 306.6 252 63.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.8e-81 306.6 260 63.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.1e-81 305.8 259 62.2
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.0e-81 305.4 241 68.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 5.2e-81 305.1 247 64.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 5.2e-81 305.1 254 63.8
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 6.8e-81 304.7 257 63.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 6.8e-81 304.7 257 63.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 8.9e-81 304.3 246 65.4
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 8.9e-81 304.3 256 63.7
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.2e-80 303.9 257 63.0
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-80 303.9 255 65.9
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.5e-80 303.5 248 64.1
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.4e-80 302.4 255 65.9
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 4.4e-80 302.0 232 67.7
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 5.8e-80 301.6 240 64.2
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.3e-79 300.4 247 65.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.7e-79 300.1 240 64.2
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 2.9e-79 299.3 248 65.7
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.7e-79 298.9 258 61.2
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.9e-79 298.5 258 61.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.1e-78 297.4 258 61.2
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.9e-78 296.6 256 61.7
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 9.2e-78 294.3 287 58.2
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.2e-77 293.9 232 65.9
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-77 293.5 257 60.7
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.5e-77 292.4 233 65.2
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.5e-77 292.4 232 66.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.0e-76 290.8 256 60.5
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.3e-76 290.4 257 61.1
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 1.7e-76 290.0 257 61.1
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.3e-76 289.7 257 61.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 8.6e-76 287.7 242 62.8
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.9e-75 286.6 238 63.0
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.8e-74 282.7 318 51.9
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.4e-73 280.4 243 61.7
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.3e-73 279.6 231 62.3
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.3e-73 279.6 251 60.2
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.1e-73 279.3 257 60.7
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 6.8e-73 278.1 245 59.6
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 9.9e-72 274.2 235 59.6
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.1e-70 270.8 247 59.1
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.7e-69 266.2 191 72.8
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 6.6e-68 261.5 192 71.4
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.9e-67 260.0 223 59.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.3e-67 258.1 255 54.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.5e-64 250.4 242 59.1
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-63 247.3 187 69.5
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 1.9e-62 243.4 233 53.6
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.2e-62 242.3 257 55.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 9.6e-59 231.1 131 83.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.1e-58 229.9 192 65.1
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 4.0e-57 225.7 257 50.6
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 4.5e-56 222.2 239 54.4
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.9e-55 219.5 128 82.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 6.4e-55 218.4 236 50.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.9e-54 216.9 196 63.8
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.1e-54 214.9 234 54.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 7.1e-54 214.9 197 53.8
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 2.1e-53 213.4 232 48.3
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 3.0e-52 209.5 166 66.3
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.1e-52 208.8 244 44.7
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.3e-50 204.1 117 81.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.1e-49 201.1 190 59.5
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-48 197.6 198 56.6
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 2.0e-48 196.8 303 42.2
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.4e-46 190.7 179 57.5
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 9.3e-46 188.0 104 80.8
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.5e-45 186.0 131 67.9
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.9e-41 171.8 247 43.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.2e-37 161.0 248 43.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 7.4e-35 151.8 205 42.4
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.8e-34 149.1 200 47.0
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.0e-33 144.8 211 46.4
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.5e-31 138.3 150 58.7
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.3e-28 130.2 79 79.7
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 3.7e-26 122.9 108 61.1
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.2e-24 117.9 108 58.3
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-24 116.7 114 57.0
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 4.5e-24 115.9 108 59.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.2e-21 107.8 189 38.6
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.1e-21 107.1 66 75.8
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.0e-20 103.2 98 61.2
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.0e-20 103.2 112 51.8
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.7e-20 102.1 62 71.0
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 5.7e-19 99.0 81 59.3
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.2e-18 97.1 67 71.6
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.2e-18 97.1 59 78.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 4.8e-18 95.9 191 35.6
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.1e-17 93.2 97 53.6
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 5.3e-17 92.4 140 42.9
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 2.2e-15 87.0 79 55.7
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 3.8e-15 86.3 175 37.1
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.5e-14 83.6 225 32.4
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 2.6e-11 73.6 46 76.1
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 2.8e-10 70.1 121 42.1
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 2.8e-10 70.1 40 85.0
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 5.3e-09 65.9 42 73.8
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.2e-07 60.5 53 56.6
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 1.5e-06 57.8 61 47.5
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.5e-06 55.8 34 64.7


User provided reference genes

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