Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 1.1e-119 433.3 219 100.0
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 2.5e-100 369.0 217 88.5
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 5.8e-73 278.1 219 68.0
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 4.3e-68 261.9 209 63.6
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.4e-63 246.9 212 61.8
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 4.2e-63 245.4 203 60.6
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.3e-61 240.4 199 62.3
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.3e-61 239.6 215 58.1
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 2.3e-61 239.6 212 59.0
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 6.7e-61 238.0 213 60.1
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 8.7e-61 237.7 205 60.5
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 8.7e-61 237.7 214 55.1
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 1.5e-60 236.9 214 57.9
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.5e-60 236.9 186 64.5
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 3.3e-60 235.7 219 58.4
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 7.4e-60 234.6 214 57.5
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.6e-59 233.4 213 58.7
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.6e-59 233.4 190 63.2
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 6.3e-59 231.5 179 63.7
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.4e-58 230.3 217 56.7
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.4e-58 229.6 207 55.1
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 3.1e-58 229.2 186 62.4
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 9.0e-58 227.6 296 49.0
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 1.2e-57 227.3 207 56.5
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 2.9e-56 222.6 210 56.2
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 3.8e-56 222.2 214 56.1
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.5e-56 221.1 190 61.6
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.2e-55 219.2 214 56.1
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 3.2e-55 219.2 216 55.1
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 9.3e-55 217.6 192 57.8
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.2e-54 217.2 186 61.3
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 2.1e-54 216.5 214 53.7
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 6.1e-54 214.9 214 55.1
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 7.9e-54 214.5 188 55.3
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.8e-53 213.4 202 55.0
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 2.3e-53 213.0 204 56.9
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 5.7e-52 208.4 223 52.9
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 9.7e-52 207.6 208 51.9
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 2.2e-51 206.5 213 52.6
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 3.7e-51 205.7 215 48.8
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 3.7e-51 205.7 213 50.7
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 8.2e-51 204.5 203 53.7
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.1e-50 204.1 208 52.9
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.4e-50 203.8 216 48.1
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.8e-50 203.4 215 52.6
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 2.4e-50 203.0 208 51.4
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.4e-50 203.0 198 54.0
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 9.1e-50 201.1 204 52.0
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 1.2e-49 200.7 212 51.9
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 2.0e-49 199.9 203 54.2
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.0e-49 199.9 212 51.4
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.6e-49 199.5 204 51.5
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 3.4e-49 199.1 215 47.4
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 7.7e-49 198.0 212 51.4
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.3e-48 197.2 200 49.0
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 2.2e-48 196.4 183 54.6
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.0e-48 195.3 203 53.2
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 8.5e-48 194.5 206 51.0
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.4e-47 193.7 206 51.5
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.4e-47 193.7 203 52.7
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 1.9e-47 193.4 206 51.9
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 3.2e-47 192.6 217 50.7
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 4.2e-47 192.2 216 46.3
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 7.2e-47 191.4 206 51.9
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 7.2e-47 191.4 211 48.8
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 9.4e-47 191.0 199 53.3
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 9.4e-47 191.0 198 54.0
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 2.7e-46 189.5 209 48.8
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 3.6e-46 189.1 212 50.5
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 3.6e-46 189.1 206 50.0
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 7.9e-46 188.0 208 48.6
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 3.9e-45 185.7 205 49.8
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 6.7e-45 184.9 210 50.0
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 8.8e-45 184.5 204 47.1
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 2.0e-44 183.3 215 44.7
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.6e-44 183.0 211 48.3
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.6e-44 183.0 211 48.3
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 3.1e-42 176.0 200 49.0
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 6.9e-42 174.9 205 48.8
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 2.6e-41 172.9 196 50.0
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 5.9e-41 171.8 221 43.4
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 7.7e-41 171.4 225 43.6
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 7.7e-41 171.4 223 44.4
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 1.0e-40 171.0 188 52.7
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.7e-40 170.2 229 48.5
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 2.2e-40 169.9 221 43.4
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 2.2e-40 169.9 229 43.2
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.2e-40 169.9 223 43.0
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 3.8e-40 169.1 225 43.1
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 3.8e-40 169.1 225 43.1
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 5.0e-40 168.7 224 42.9
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 8.5e-40 167.9 225 43.6
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 1.9e-39 166.8 223 43.0
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 1.6e-38 163.7 190 46.3
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.4e-37 160.6 215 44.2
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.4e-37 160.6 178 52.2
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 2.3e-37 159.8 178 52.2
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 1.7e-32 143.7 148 54.7
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.2e-30 137.5 155 53.5
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 4.7e-30 135.6 122 54.9
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 6.3e-27 125.2 195 40.0
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 1.4e-26 124.0 214 35.5
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 1.4e-26 124.0 122 50.0
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 4.5e-25 119.0 106 51.9
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.3e-24 117.5 85 65.9
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.2e-24 116.7 207 38.2
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.2e-24 116.7 109 51.4
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 2.1e-22 110.2 176 39.8
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 2.1e-22 110.2 204 36.8
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 8.0e-22 108.2 186 34.9
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.0e-21 106.3 84 56.0
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 8.8e-21 104.8 52 98.1
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.5e-20 104.0 193 36.8
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 2.8e-19 99.8 126 43.7
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 7.2e-15 85.1 89 50.6
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.4e-13 80.9 137 38.0
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 7.8e-09 65.1 53 54.7
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 7.8e-09 65.1 58 56.9
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 2.9e-08 63.2 59 50.8


User provided reference genes

Program Settings