Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05354 Corylus avellana HOM05D005310 ORTHO05D006920 2.0e-178 629.0 319 100.0
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 9.3e-96 354.4 495 46.5
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 4.6e-95 352.1 495 45.7
Ciclev10018335m.g Citrus clementina HOM05D005310 ORTHO05D006920 3.3e-93 345.9 487 44.8
QL05p049965 Quercus lobata HOM05D005310 ORTHO05D006920 3.3e-93 345.9 495 46.1
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 3.7e-92 342.4 495 44.6
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 9.0e-91 337.8 495 43.4
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 1.2e-90 337.4 495 44.6
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 1.5e-90 337.0 470 45.5
Eucgr.E02785 Eucalyptus grandis HOM05D005310 ORTHO05D006920 3.4e-90 335.9 495 43.6
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 3.4e-90 335.9 487 44.4
Migut.M01009 Erythranthe guttata HOM05D005310 ORTHO05D006920 7.6e-90 334.7 442 46.8
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 1.7e-89 333.6 495 43.8
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 1.7e-89 333.6 494 44.5
vmacro16023 Vaccinium macrocarpon HOM05D005310 ORTHO05D006920 8.4e-89 331.3 265 66.0
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 1.9e-88 330.1 494 43.7
PGR042G1369 Punica granatum HOM05D005310 ORTHO05D006920 2.5e-88 329.7 497 43.1
TWI53G0456 Tripterygium wilfordii HOM05D005310 ORTHO05D006920 2.5e-88 329.7 495 42.6
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 5.5e-88 328.6 495 43.6
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 5.5e-88 328.6 495 43.0
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 9.3e-88 327.8 495 42.2
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 9.3e-88 327.8 498 43.4
FAN25G3188 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.7e-87 326.2 507 42.4
Duzib192G0594 Durio zibethinus HOM05D005310 ORTHO05D006920 1.3e-86 323.9 492 42.5
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 3.9e-86 322.4 262 65.6
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 5.1e-86 322.0 495 43.4
unitig_0.g743 Utricularia gibba HOM05D005310 ORTHO05D006920 6.7e-86 321.6 482 41.7
Lj4g0024191 Lotus japonicus HOM05D005310 ORTHO05D006920 1.1e-85 320.9 495 42.6
VMungo0251G0247 Vigna mungo HOM05D005310 ORTHO05D006920 1.1e-85 320.9 495 42.6
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.9e-85 320.1 495 42.2
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 2.5e-85 319.7 495 42.2
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 4.3e-85 318.9 500 44.2
Manes.16G042900 Manihot esculenta HOM05D005310 ORTHO05D006920 4.3e-85 318.9 495 43.6
Oeu040921.3 Olea europaea HOM05D005310 ORTHO05D006920 5.7e-85 318.5 262 64.5
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 9.7e-85 317.8 495 42.4
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 1.6e-84 317.0 496 41.5
Phvul.002G241100 Phaseolus vulgaris HOM05D005310 ORTHO05D006920 4.8e-84 315.5 495 42.6
Dinv32339 Davidia involucrata HOM05D005310 ORTHO05D006920 1.1e-83 314.3 262 63.7
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 2.4e-83 313.2 492 41.9
Thecc.06G165700 Theobroma cacao HOM05D005310 ORTHO05D006920 2.4e-83 313.2 493 41.6
Lalb_Chr12g0204951 Lupinus albus HOM05D005310 ORTHO05D006920 6.9e-83 311.6 525 41.5
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 1.2e-82 310.8 262 61.8
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 2.6e-82 309.7 495 41.6
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 5.9e-82 308.5 496 41.7
Glyma.05G161000 Glycine max HOM05D005310 ORTHO05D006920 5.9e-82 308.5 496 41.9
PSO210G5690 Papaver somniferum HOM05D005310 ORTHO05D006920 1.0e-81 307.8 495 40.6
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 1.3e-81 307.4 496 41.9
Ah.14g086990 Amaranthus hybridus HOM05D005310 ORTHO05D006920 2.9e-81 306.2 262 61.8
Medtr8g087310 Medicago truncatula HOM05D005310 ORTHO05D006920 2.9e-81 306.2 495 41.8
TPR.G6733 Trifolium pratense HOM05D005310 ORTHO05D006920 3.8e-81 305.8 495 41.8
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 6.5e-81 305.1 488 41.8
Glyma.08G118400 Glycine max HOM05D005310 ORTHO05D006920 1.1e-80 304.3 495 41.2
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 1.4e-80 303.9 262 61.1
Cpa.g.sc7.109 Carica papaya HOM05D005310 ORTHO05D006920 1.9e-80 303.5 263 61.6
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 1.9e-80 303.5 495 41.2
Sp7g17520 Schrenkiella parvula HOM05D005310 ORTHO05D006920 3.2e-80 302.8 496 40.3
Carub.0007s2242 Capsella rubella HOM05D005310 ORTHO05D006920 9.4e-80 301.2 487 40.9
AUR62041821 Chenopodium quinoa HOM05D005310 ORTHO05D006920 9.4e-80 301.2 509 40.9
Ca_17897_v3 Cicer arietinum L. HOM05D005310 ORTHO05D006920 1.2e-79 300.8 495 41.4
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 1.6e-79 300.4 496 40.3
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 1.6e-79 300.4 262 61.8
AL7G35440 Arabidopsis lyrata HOM05D005310 ORTHO05D006920 4.6e-79 298.9 496 40.1
AT4G18810 Arabidopsis thaliana HOM05D005310 ORTHO05D006920 4.6e-79 298.9 496 39.9
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 4.6e-79 298.9 496 39.7
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 1.0e-78 297.7 506 40.5
Psat7g068720 Pisum sativum HOM05D005310 ORTHO05D006920 1.0e-78 297.7 495 41.0
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 1.0e-78 297.7 495 40.4
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 1.4e-78 297.4 495 39.8
Aqoxy1G01994 Aquilegia oxysepala HOM05D005310 ORTHO05D006920 1.4e-78 297.4 262 60.7
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 1.4e-78 297.4 262 61.5
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 1.8e-78 297.0 496 39.7
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 1.8e-78 297.0 496 39.7
Haze_05378 Corylus avellana HOM05D005310 ORTHO05D006920 2.3e-78 296.6 226 71.7
SGA_v2.0_scaffold16G07714 Striga asiatica HOM05D005310 ORTHO05D006920 2.3e-78 296.6 497 40.6
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 3.9e-78 295.8 417 45.6
Sabra04G0040500 Salix brachista HOM05D005310 ORTHO05D006920 5.1e-78 295.4 579 37.1
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 6.7e-78 295.0 262 59.2
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 6.7e-78 295.0 262 59.2
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 1.1e-77 294.3 263 60.5
AUR62039478 Chenopodium quinoa HOM05D005310 ORTHO05D006920 2.5e-77 293.1 328 51.2
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 4.3e-77 292.4 262 59.2
Lsat_1_v5_gn_1_110100 Lactuca sativa HOM05D005310 ORTHO05D006920 7.4e-77 291.6 492 41.3
HPP92_004025 Vanilla planifolia HOM05D005310 ORTHO05D006920 2.4e-75 286.6 262 56.5
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 4.1e-75 285.8 262 58.0
Actinidia07651 Actinidia chinensis HOM05D005310 ORTHO05D006920 1.5e-74 283.9 457 42.2
CDE04G2110 Ceratophyllum demersum HOM05D005310 ORTHO05D006920 2.0e-74 283.5 262 58.8
Actinidia02744 Actinidia chinensis HOM05D005310 ORTHO05D006920 3.4e-74 282.7 259 61.8
HPP92_004012 Vanilla planifolia HOM05D005310 ORTHO05D006920 1.7e-73 280.4 262 55.7
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.1e-72 277.7 412 43.9
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 2.5e-72 276.6 262 56.5
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 1.2e-71 274.2 295 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2005 Anthoceros agrestis HOM05D005310 ORTHO05D006920 2.3e-70 270.0 262 53.8
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 6.3e-68 261.9 262 52.3
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 8.5e-65 251.5 262 49.6
Mapoly0037s0097 Marchantia polymorpha HOM05D005310 ORTHO05D006920 1.9e-64 250.4 262 48.5
Haze_05356 Corylus avellana HOM05D005310 ORTHO05D006920 9.4e-64 248.1 172 77.3
DCAR_027984 Daucus carota HOM05D005310 ORTHO05D006920 1.2e-63 247.7 497 37.0
SalBow8G4237 Salvia bowleyana HOM05D005310 ORTHO05D006920 2.1e-63 246.9 262 51.5
Hund04397 Selenicereus undatus HOM05D005310 ORTHO05D006920 2.3e-62 243.4 262 52.3
Cc02_g15580 Coffea canephora HOM05D005310 ORTHO05D006920 9.1e-51 204.9 159 66.7
TAR627G0081 Trochodendron aralioides HOM05D005310 ORTHO05D006920 9.1e-51 204.9 386 41.7
Prupe.6G055000 Prunus persica HOM05D005310 ORTHO05D006920 1.2e-50 204.5 168 61.3
arahy.Tifrunner.gnm1.ann1.NMJG4G Arachis hypogaea HOM05D005310 ORTHO05D006920 3.5e-50 203.0 162 67.3
RcHm_v2.0_Chr5g0061601 Rosa chinensis HOM05D005310 ORTHO05D006920 1.7e-49 200.7 160 67.5
RcHm_v2.0_Chr5g0011641 Rosa chinensis HOM05D005310 ORTHO05D006920 2.2e-49 200.3 159 67.9
Cre05.g244800 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 2.5e-48 196.8 261 42.1
CBR_g48496 Chara braunii HOM05D005310 ORTHO05D006920 1.3e-36 157.9 262 36.6
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 1.1e-35 154.8 271 37.3
Prupe.7G223300 Prunus persica HOM05D005310 ORTHO05D006920 1.4e-35 154.5 133 63.2
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 5.9e-34 149.1 337 32.9
RcHm_v2.0_Chr5g0011651 Rosa chinensis HOM05D005310 ORTHO05D006920 1.9e-32 144.1 310 33.5
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 7.3e-32 142.1 224 40.2
Prupe.3G259500 Prunus persica HOM05D005310 ORTHO05D006920 9.5e-32 141.7 79 84.8
Cc02_g15590 Coffea canephora HOM05D005310 ORTHO05D006920 2.1e-31 140.6 307 34.5
arahy.Tifrunner.gnm1.ann1.W2RHW2 Arachis hypogaea HOM05D005310 ORTHO05D006920 6.8e-30 135.6 297 34.3
RcHm_v2.0_Chr2g0109861 Rosa chinensis HOM05D005310 ORTHO05D006920 4.4e-29 132.9 77 75.3
RcHm_v2.0_Chr2g0109871 Rosa chinensis HOM05D005310 ORTHO05D006920 1.5e-21 107.8 108 59.3
Haze_05380 Corylus avellana HOM05D005310 ORTHO05D006920 2.6e-21 107.1 57 94.7
Dinv32338 Davidia involucrata HOM05D005310 ORTHO05D006920 2.1e-18 97.4 57 87.7
Prupe.8G174100 Prunus persica HOM05D005310 ORTHO05D006920 4.6e-18 96.3 95 53.7
Haze_05379 Corylus avellana HOM05D005310 ORTHO05D006920 9.5e-16 88.6 50 94.0
CBR_g23069 Chara braunii HOM05D005310 ORTHO05D006920 6.8e-14 82.4 253 28.9
vmacro16024 Vaccinium macrocarpon HOM05D005310 ORTHO05D006920 6.8e-14 82.4 57 70.2
BcaC09g51481 Brassica carinata HOM05D005310 ORTHO05D006920 1.9e-11 74.3 65 58.5
RcHm_v2.0_Chr0c19g0500071 Rosa chinensis HOM05D005310 ORTHO05D006920 5.4e-11 72.8 44 65.9
Cre01.g027850 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D044290 1.3e-09 68.2 135 29.6
MCO10G294 Micromonas commoda HOM05D005310 ORTHO05D006920 3.0e-09 67.0 143 28.7
Hund23016 Selenicereus undatus HOM05D005310 ORTHO05D006920 8.6e-09 65.5 156 34.6
Cre06.g274650 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 1.1e-08 65.1 254 26.4
Actinidia39521 Actinidia chinensis HOM05D005310 ORTHO05D006920 2.5e-08 63.9 35 77.1
Hund23039 Selenicereus undatus HOM05D005310 ORTHO05D006920 1.6e-07 61.2 38 73.7


User provided reference genes

Program Settings