Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 4.2e-56 221.1 109 100.0
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 3.3e-53 211.5 109 97.2
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 8.0e-47 190.3 108 90.7
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 3.9e-46 188.0 97 95.9
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 6.5e-33 144.1 69 97.1
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 1.2e-31 139.8 69 92.8
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 3.6e-31 138.3 71 88.7
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.4e-30 136.3 71 85.9
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 3.0e-30 135.2 71 83.1
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 3.0e-30 135.2 69 89.9
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 4.0e-30 134.8 71 81.7
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 4.0e-30 134.8 69 92.8
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 6.8e-30 134.0 71 87.3
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.5e-29 132.9 71 83.1
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.5e-29 132.9 71 85.9
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 2.0e-29 132.5 71 83.1
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 4.4e-29 131.3 71 84.5
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 9.8e-29 130.2 71 83.1
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 9.8e-29 130.2 71 80.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 9.8e-29 130.2 71 85.9
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 1.3e-28 129.8 71 80.3
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 1.7e-28 129.4 71 80.3
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 1.7e-28 129.4 71 80.3
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 2.8e-28 128.6 71 81.7
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.8e-28 128.6 71 78.9
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 77.5
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 83.1
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 83.1
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 76.1
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 81.7
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 78.9
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 3.7e-28 128.3 71 78.9
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 4.8e-28 127.9 71 80.3
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 4.8e-28 127.9 71 80.3
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 6.3e-28 127.5 71 77.5
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 6.3e-28 127.5 71 77.5
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 6.3e-28 127.5 71 78.9
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 6.3e-28 127.5 71 80.3
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 6.3e-28 127.5 71 80.3
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 8.3e-28 127.1 70 78.6
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 78.9
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 77.5
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 80.3
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 81.7
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 78.9
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 78.9
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 81.7
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 8.3e-28 127.1 71 77.5
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 1.1e-27 126.7 71 76.1
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 1.1e-27 126.7 71 78.9
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 1.4e-27 126.3 69 81.2
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 1.8e-27 125.9 71 78.9
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 1.8e-27 125.9 71 78.9
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 1.8e-27 125.9 71 78.9
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.4e-27 125.6 71 76.1
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 3.1e-27 125.2 71 78.9
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 3.1e-27 125.2 71 78.9
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 4.1e-27 124.8 70 75.7
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 4.1e-27 124.8 71 74.6
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 4.1e-27 124.8 69 79.7
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 5.4e-27 124.4 71 77.5
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 5.4e-27 124.4 71 77.5
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 5.4e-27 124.4 71 77.5
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 7.0e-27 124.0 75 72.0
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 9.1e-27 123.6 71 78.9
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 9.1e-27 123.6 71 73.2
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 9.1e-27 123.6 104 63.5
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 9.1e-27 123.6 71 76.1
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 1.2e-26 123.2 71 73.2
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 1.2e-26 123.2 71 73.2
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.2e-26 123.2 71 76.1
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.6e-26 122.9 71 76.1
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 1.6e-26 122.9 71 73.2
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 1.6e-26 122.9 71 73.2
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 1.6e-26 122.9 71 76.1
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 1.6e-26 122.9 71 76.1
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 2.0e-26 122.5 71 74.6
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 2.0e-26 122.5 71 76.1
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 2.0e-26 122.5 71 76.1
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 2.7e-26 122.1 71 74.6
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 2.7e-26 122.1 71 71.8
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 3.5e-26 121.7 75 70.7
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 3.5e-26 121.7 71 73.2
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 3.5e-26 121.7 69 78.3
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 3.5e-26 121.7 69 75.4
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 4.5e-26 121.3 71 71.8
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 4.5e-26 121.3 71 71.8
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 5.9e-26 120.9 71 71.8
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 5.9e-26 120.9 71 74.6
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 1.0e-25 120.2 71 71.8
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 1.0e-25 120.2 69 75.4
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 1.0e-25 120.2 71 74.6
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 1.3e-25 119.8 70 71.4
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.3e-25 119.8 92 64.1
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 1.3e-25 119.8 71 74.6
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.7e-25 119.4 92 63.0
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 2.3e-25 119.0 71 71.8
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.3e-25 119.0 71 73.2
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.3e-25 119.0 71 73.2
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 2.3e-25 119.0 71 71.8
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 2.3e-25 119.0 71 70.4
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 2.3e-25 119.0 71 70.4
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 3.8e-25 118.2 71 71.8
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 3.8e-25 118.2 71 71.8
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 3.8e-25 118.2 71 71.8
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 3.8e-25 118.2 71 71.8
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 3.8e-25 118.2 71 71.8
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 8.6e-25 117.1 71 70.4
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 1.1e-24 116.7 69 73.9
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.5e-24 116.3 71 67.6
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 1.5e-24 116.3 71 69.0
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 2.5e-24 115.5 71 67.6
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 2.5e-24 115.5 71 69.0
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 3.3e-24 115.2 71 70.4
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 3.3e-24 115.2 71 70.4
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 4.2e-24 114.8 71 69.0
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 67.6
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 67.6
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 67.6
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 67.6
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 67.6
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 69.0
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 5.5e-24 114.4 71 67.6
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.6e-23 112.8 59 79.7
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 2.1e-23 112.5 71 66.2
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 1.4e-22 109.8 71 66.2
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 1.4e-22 109.8 61 80.3
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.8e-22 109.4 71 63.4
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 3.0e-22 108.6 71 62.0
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 6.8e-22 107.5 69 65.2
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 1.5e-21 106.3 71 60.6
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 2.0e-21 105.9 71 59.2
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 2.0e-21 105.9 71 66.2
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 9.8e-21 103.6 51 92.2
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 9.2e-19 97.1 69 59.4
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.3e-17 92.4 71 62.0
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-17 92.0 69 56.5
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.8e-14 82.8 46 76.1
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 1.9e-11 72.8 45 68.9
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 1.7e-09 66.2 58 43.1
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.1e-06 57.0 29 89.7


User provided reference genes

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