Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.2e-118 429.9 212 100.0
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.6e-104 382.9 197 94.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 5.6e-81 304.7 211 74.4
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.4e-77 291.2 201 72.1
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 9.6e-73 277.3 161 81.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.4e-71 273.5 207 68.6
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.4e-71 273.5 203 67.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.6e-70 269.2 202 69.3
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 2.6e-70 269.2 202 68.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 5.8e-70 268.1 199 64.8
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 7.6e-70 267.7 165 81.2
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.0e-69 267.3 216 66.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.3e-69 266.9 207 69.6
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 8.4e-69 264.2 202 69.8
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.1e-68 263.8 203 68.5
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.4e-68 263.5 190 70.0
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.2e-68 261.9 200 69.5
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 4.2e-68 261.9 207 67.1
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 4.2e-68 261.9 205 68.8
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.6e-67 260.0 208 66.3
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 6.0e-67 258.1 198 67.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.0e-66 257.3 180 71.7
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.0e-66 257.3 197 65.0
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.3e-66 256.9 142 86.6
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 1.8e-66 256.5 186 67.7
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.3e-66 256.1 177 72.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.0e-66 255.8 224 62.9
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-65 253.1 201 64.2
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.9e-65 253.1 201 63.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.5e-65 252.7 182 71.4
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.3e-65 252.3 190 66.8
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.7e-65 251.5 201 63.2
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.7e-64 248.8 197 63.5
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.7e-64 248.8 128 88.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.8e-64 248.4 206 66.5
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 6.2e-64 248.1 201 63.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 8.2e-64 247.7 206 63.1
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.1e-63 247.3 206 65.5
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.1e-63 247.3 188 67.0
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.8e-63 246.5 200 65.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.8e-63 246.5 203 65.0
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.1e-63 245.7 128 85.9
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.1e-63 245.7 201 63.7
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.5e-62 243.4 195 62.6
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.5e-62 243.4 128 84.4
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.5e-62 243.4 201 62.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 3.4e-62 242.3 225 61.8
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.8e-61 238.8 255 54.5
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 5.0e-61 238.4 128 82.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 5.0e-61 238.4 162 69.8
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 6.5e-61 238.0 190 63.2
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 8.4e-61 237.7 132 84.1
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 8.4e-61 237.7 190 62.6
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.1e-60 237.3 128 83.6
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.5e-60 236.1 184 64.1
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.2e-60 235.7 162 68.5
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 3.2e-60 235.7 187 64.2
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 5.5e-60 235.0 135 79.3
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.6e-59 233.4 178 65.7
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.1e-59 233.0 128 80.5
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.1e-59 233.0 128 80.5
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.1e-59 233.0 175 67.4
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.7e-59 232.6 183 66.7
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.7e-59 232.6 134 78.4
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.9e-59 231.1 195 60.5
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.9e-59 231.1 200 59.0
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 7.9e-59 231.1 140 78.6
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.0e-58 230.7 127 83.5
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.0e-58 230.7 122 83.6
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.1e-57 227.3 256 53.9
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.3e-56 223.8 139 71.9
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.7e-56 222.2 135 72.6
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 8.2e-56 221.1 156 67.3
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.3e-55 218.4 185 61.1
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.3e-55 218.4 172 62.2
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.9e-55 218.0 156 66.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 9.0e-55 217.6 201 59.7
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.2e-54 217.2 127 76.4
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.2e-54 217.2 115 86.1
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.0e-54 216.5 194 57.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.6e-54 216.1 127 78.7
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.4e-54 215.7 166 62.7
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.4e-54 215.7 146 68.5
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.4e-54 215.7 146 68.5
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.9e-54 214.9 118 83.9
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.9e-53 212.6 145 67.6
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.8e-53 212.2 161 62.7
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 3.8e-53 212.2 147 70.1
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.8e-53 212.2 185 59.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 5.0e-53 211.8 122 80.3
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.9e-52 209.9 172 59.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.6e-51 205.7 204 53.4
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 4.6e-51 205.3 165 61.8
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 2.3e-50 203.0 113 78.8
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 3.0e-50 202.6 205 51.2
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.0e-50 202.6 206 52.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.1e-50 201.8 161 62.1
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.7e-50 201.4 207 53.6
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 6.7e-50 201.4 173 64.7
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 2.5e-49 199.5 204 52.5
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 2.2e-48 196.4 168 59.5
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.7e-48 195.7 129 66.7
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.7e-48 195.7 129 66.7
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 4.8e-48 195.3 148 64.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.8e-47 193.4 119 77.3
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.1e-47 192.6 160 59.4
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-46 190.7 196 51.0
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.0e-46 189.9 177 56.5
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 4.5e-46 188.7 232 47.8
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.5e-46 188.7 122 67.2
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.2e-45 186.4 127 63.0
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.2e-45 186.4 227 50.7
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.5e-45 184.9 127 63.0
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 6.5e-45 184.9 127 62.2
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-44 183.3 131 63.4
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.2e-44 182.2 187 46.5
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 4.2e-44 182.2 149 63.8
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 9.4e-44 181.0 137 60.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.6e-43 180.3 120 64.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.7e-43 179.5 210 45.7
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 6.1e-43 178.3 143 55.9
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-42 177.2 115 68.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.1e-42 175.3 180 54.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 8.8e-42 174.5 121 59.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.0e-41 173.3 160 53.1
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.4e-41 172.2 136 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 4.4e-41 172.2 115 63.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.4e-41 172.2 185 53.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.8e-40 168.7 143 52.4
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.8e-40 168.7 143 52.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 6.3e-40 168.3 143 52.4
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 8.2e-40 167.9 202 50.0
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-39 167.2 123 56.1
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.8e-39 166.8 121 56.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.8e-39 166.8 121 56.2
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 2.4e-39 166.4 121 56.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 2.4e-39 166.4 121 56.2
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 7.0e-39 164.9 182 49.5
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.7e-37 160.2 103 72.8
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.9e-37 159.5 120 54.2
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.9e-37 159.5 84 82.1
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.0e-37 158.7 171 50.3
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 5.0e-37 158.7 114 60.5
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 8.5e-37 157.9 167 53.3
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.1e-36 157.5 106 69.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 9.4e-36 154.5 121 52.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.1e-35 153.3 94 78.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.7e-33 145.2 93 75.3
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 7.5e-33 144.8 93 75.3
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 5.3e-31 138.7 102 65.7
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 9.1e-31 137.9 145 45.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.7e-27 126.3 65 87.7
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.0e-26 122.5 65 84.6
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 6.8e-26 121.7 63 84.1
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.0e-25 120.2 120 43.3
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.4e-23 113.2 148 41.9
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.4e-23 112.1 112 50.9
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.3e-21 107.5 73 68.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 6.5e-21 105.1 129 39.5
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 3.4e-17 92.8 117 45.3
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.8e-15 87.0 85 54.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.1e-12 77.8 109 42.2
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.6e-11 72.8 64 56.2
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 4.0e-10 69.3 51 56.9
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 8.9e-10 68.2 118 38.1
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-09 67.4 49 57.1
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-08 63.5 119 40.3
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 3.2e-07 59.7 32 81.2


User provided reference genes

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