Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 4.0e-96 354.8 180 100.0
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 1.2e-87 326.6 173 96.5
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 1.1e-58 230.3 173 71.7
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 9.7e-58 227.3 181 70.2
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 4.4e-50 201.8 179 62.6
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 5.7e-50 201.4 179 63.7
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 1.7e-49 199.9 182 63.2
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 8.2e-49 197.6 181 62.4
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 8.2e-49 197.6 187 61.5
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 1.1e-48 197.2 181 61.9
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 4.1e-48 195.3 182 62.1
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 5.3e-48 194.9 179 61.5
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 1.2e-47 193.7 179 62.0
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 1.3e-46 190.3 176 58.5
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 8.5e-46 187.6 174 59.8
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 1.1e-45 187.2 179 62.6
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 7.2e-45 184.5 174 59.2
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 9.4e-45 184.1 181 59.7
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.7e-44 182.6 179 57.5
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 4.7e-44 181.8 173 60.1
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 8.0e-44 181.0 182 61.0
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 8.0e-44 181.0 180 59.4
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 8.0e-44 181.0 179 57.0
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 8.0e-44 181.0 173 56.1
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 1.0e-43 180.6 180 60.0
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.0e-43 180.6 179 57.0
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 1.4e-43 180.3 174 56.9
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.4e-43 180.3 173 58.4
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.8e-43 179.9 182 54.9
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.3e-43 179.5 182 59.9
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 2.3e-43 179.5 181 56.9
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 3.0e-43 179.1 182 59.9
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 4.0e-43 178.7 178 59.6
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 6.7e-43 177.9 173 56.1
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 1.2e-42 177.2 182 59.9
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 1.5e-42 176.8 178 59.0
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 3.3e-42 175.6 174 58.0
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 3.3e-42 175.6 174 58.0
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 9.7e-42 174.1 178 53.9
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 1.3e-41 173.7 176 55.1
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.7e-41 173.3 182 58.8
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 1.7e-41 173.3 182 58.8
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.7e-41 173.3 182 58.8
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.2e-41 172.9 171 55.6
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.2e-41 172.9 171 55.6
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 2.2e-41 172.9 178 53.9
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 4.8e-41 171.8 177 59.3
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 8.2e-41 171.0 174 55.2
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 3.1e-40 169.1 173 52.6
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 5.3e-40 168.3 173 52.0
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 7.0e-40 167.9 176 57.4
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 1.6e-39 166.8 188 52.1
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 3.5e-39 165.6 173 52.0
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 4.5e-39 165.2 177 52.0
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 5.9e-39 164.9 188 51.1
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 7.7e-39 164.5 185 52.4
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 7.7e-39 164.5 181 55.8
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 1.0e-38 164.1 173 55.5
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.7e-38 163.3 183 54.6
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.7e-38 163.3 183 54.6
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 2.9e-38 162.5 189 50.8
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 3.8e-38 162.2 182 54.4
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 6.5e-38 161.4 175 53.1
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 8.5e-38 161.0 185 50.8
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 1.1e-37 160.6 178 53.9
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 1.9e-37 159.8 181 50.3
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 2.5e-37 159.5 184 51.1
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 2.5e-37 159.5 169 53.8
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.5e-37 159.5 183 52.5
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.5e-37 159.5 158 54.4
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 2.5e-37 159.5 189 49.2
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 2.5e-37 159.5 177 50.3
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.2e-37 159.1 179 52.5
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 4.2e-37 158.7 179 50.3
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 5.5e-37 158.3 180 51.7
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 5.5e-37 158.3 175 52.0
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 9.4e-37 157.5 184 51.6
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 1.2e-36 157.1 191 53.9
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 1.2e-36 157.1 184 51.6
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 2.1e-36 156.4 178 50.6
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 2.7e-36 156.0 179 49.2
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 3.6e-36 155.6 167 54.5
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 4.7e-36 155.2 177 52.5
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 8.0e-36 154.5 175 56.0
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 2.3e-35 152.9 164 54.3
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 2.3e-35 152.9 174 52.3
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 4.0e-35 152.1 176 49.4
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 1.2e-34 150.6 182 47.8
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 3.7e-33 145.6 178 48.9
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 6.3e-33 144.8 169 49.7
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 6.3e-33 144.8 184 44.6
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 8.3e-33 144.4 176 51.1
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.4e-32 143.7 181 51.9
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 1.8e-32 143.3 177 49.7
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 1.8e-32 143.3 174 47.7
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 4.1e-32 142.1 184 44.6
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 5.4e-32 141.7 164 50.0
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 3.5e-31 139.0 212 43.4
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.9e-29 133.3 160 46.2
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 3.6e-28 129.0 138 52.2
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 3.6e-28 129.0 138 52.2
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 8.0e-28 127.9 168 47.6
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.2e-27 125.2 178 43.8
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 5.2e-27 125.2 178 43.8
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 1.3e-25 120.6 184 42.9
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 3.7e-25 119.0 176 43.8
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 2.4e-24 116.3 193 42.5
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 2.0e-23 113.2 180 40.6
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.6e-20 103.6 117 54.7
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 3.6e-20 102.4 191 40.3
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 7.5e-18 94.7 174 39.1
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 2.2e-17 93.2 200 36.0
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 4.9e-17 92.0 193 36.8
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 4.9e-17 92.0 202 36.1
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 1.4e-16 90.5 128 46.9
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 1.8e-16 90.1 193 36.3
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 1.8e-16 90.1 198 36.4
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 1.8e-16 90.1 198 36.4
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 1.8e-16 90.1 198 36.4
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 2.4e-16 89.7 201 36.3
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 5.4e-16 88.6 198 35.9
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 1.2e-15 87.4 201 35.8
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 1.2e-15 87.4 207 36.2
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 7.8e-15 84.7 96 49.0
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 3.9e-14 82.4 202 35.1
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 9.5e-13 77.8 193 33.2
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 6.8e-11 71.6 86 47.7
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 1.2e-10 70.9 193 31.1
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 1.5e-10 70.5 199 31.7
SGA_v2.0_scaffold14G06923 Striga asiatica HOM05D001935 ORTHO05D001700 2.2e-09 66.6 127 33.1
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 4.1e-08 62.4 167 29.3
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 3.5e-07 59.3 182 29.1
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.6e-07 58.9 170 29.4
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 1.3e-06 57.4 163 30.1
Actinidia36351 Actinidia chinensis HOM05D001935 ORTHO05D001700 3.0e-06 56.2 89 38.2
Duzib133G0729 Durio zibethinus HOM05D001935 ORTHO05D001700 6.6e-06 55.1 181 27.1
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 6.6e-06 55.1 106 35.8


User provided reference genes

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