Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 4.3e-150 534.6 270 100.0
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 3.4e-99 365.5 248 79.8
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 5.1e-87 325.1 248 72.2
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 3.0e-71 272.7 290 59.7
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 4.1e-60 235.7 252 56.3
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 9.4e-57 224.6 275 52.0
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 2.1e-56 223.4 255 53.7
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 6.8e-55 218.4 247 56.7
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 4.4e-54 215.7 251 49.8
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 7.5e-54 214.9 246 52.0
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 4.8e-53 212.2 251 53.4
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.4e-52 210.7 225 56.4
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.4e-52 210.7 225 56.4
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 2.4e-52 209.9 256 52.0
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 2.4e-52 209.9 250 51.6
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 5.4e-52 208.8 248 51.2
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 9.1e-52 208.0 246 50.4
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 1.6e-51 207.2 245 53.1
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 1.6e-51 207.2 248 52.0
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 1.6e-51 207.2 248 51.2
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 4.5e-51 205.7 248 51.2
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 4.5e-51 205.7 246 52.4
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 5.9e-51 205.3 246 50.4
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.0e-50 204.5 257 48.2
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 1.7e-50 203.8 239 50.2
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 2.2e-50 203.4 256 50.0
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 3.8e-50 202.6 251 52.2
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 5.0e-50 202.2 257 47.1
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 5.0e-50 202.2 253 49.8
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 1.1e-49 201.1 250 52.4
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 1.9e-49 200.3 252 48.8
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 7.2e-49 198.4 278 46.4
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 7.2e-49 198.4 255 47.1
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 9.4e-49 198.0 271 50.6
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 4.7e-48 195.7 223 52.0
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 6.1e-48 195.3 250 51.2
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 8.0e-48 194.9 271 50.2
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 1.0e-47 194.5 252 48.4
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 1.4e-47 194.1 243 49.0
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 3.0e-47 193.0 248 50.8
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 3.0e-47 193.0 226 50.9
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 2.6e-46 189.9 270 47.8
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 3.4e-46 189.5 247 48.2
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 3.4e-46 189.5 192 54.7
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 5.7e-46 188.7 251 47.8
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.3e-45 187.6 251 48.2
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 1.3e-45 187.6 262 46.2
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 4.9e-45 185.7 251 47.0
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.4e-44 184.1 250 47.2
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 1.4e-44 184.1 248 47.6
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 1.4e-44 184.1 253 49.0
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 1.8e-44 183.7 248 50.0
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 9.1e-44 181.4 253 45.1
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 2.0e-43 180.3 251 45.8
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 3.5e-43 179.5 262 49.6
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 3.5e-43 179.5 257 45.9
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 8.6e-42 174.9 266 44.7
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 5.6e-41 172.2 251 45.0
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 2.1e-40 170.2 259 44.4
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 6.1e-40 168.7 256 44.9
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 6.1e-40 168.7 251 44.6
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 1.4e-39 167.5 145 64.1
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 2.3e-39 166.8 251 44.2
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 3.0e-39 166.4 248 44.4
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 6.8e-39 165.2 255 44.7
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 6.4e-37 158.7 253 42.7
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 1.6e-35 154.1 248 39.9
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 2.7e-35 153.3 251 42.6
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 2.7e-35 153.3 246 43.1
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 1.2e-30 137.9 221 40.7
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 1.5e-30 137.5 268 38.8
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 2.6e-30 136.7 257 39.7
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 4.4e-30 136.0 244 36.9
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 7.5e-30 135.2 206 42.7
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 9.8e-30 134.8 210 41.4
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 2.9e-29 133.3 122 58.2
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 3.7e-29 132.9 239 39.7
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 8.3e-29 131.7 221 38.5
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.1e-28 131.3 292 36.0
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 1.4e-28 131.0 220 42.3
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 5.0e-26 122.5 282 35.8
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.2e-22 111.3 98 61.2
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 1.9e-17 94.0 145 42.8
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 7.3e-17 92.0 77 59.7
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.4e-15 87.8 150 38.0
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 2.6e-14 83.6 106 47.2
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 1.6e-11 74.3 254 34.6
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 5.2e-07 59.3 261 31.0
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 3.4e-06 56.6 53 62.3


User provided reference genes

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