Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04923 Corylus avellana HOM05D002463 ORTHO05D002669 2.0e-42 175.3 84 100.0
Haze_04919 Corylus avellana HOM05D002463 ORTHO05D022275 5.9e-42 173.7 84 98.8
Haze_01547 Corylus avellana HOM05D002463 ORTHO05D002669 3.7e-28 127.9 64 92.2
Cfa021325 Carpinus fangiana HOM05D002463 ORTHO05D002669 5.4e-27 124.0 64 89.1
CiPaw.05G165800 Carya illinoinensis HOM05D002463 ORTHO05D002669 5.0e-25 117.5 64 84.4
Prupe.1G343400 Prunus persica HOM05D002463 ORTHO05D002669 1.1e-22 109.8 64 76.6
Dinv26530 Davidia involucrata HOM05D002463 ORTHO05D002669 1.8e-22 109.0 64 78.1
MD13G1009300 Malus domestica HOM05D002463 ORTHO05D002669 3.1e-22 108.2 65 80.0
FvH4_4g36430 Fragaria vesca HOM05D002463 ORTHO05D002669 1.5e-21 105.9 64 75.0
FAN07G1661 Fragaria x ananassa HOM05D002463 ORTHO05D002669 1.5e-21 105.9 64 75.0
FAN12G3719 Fragaria x ananassa HOM05D002463 ORTHO05D002669 1.5e-21 105.9 64 75.0
FAN22G1547 Fragaria x ananassa HOM05D002463 ORTHO05D002669 1.5e-21 105.9 64 75.0
Lj3A853T79 Lonicera japonica HOM05D002463 ORTHO05D002669 1.5e-21 105.9 64 73.4
RcHm_v2.0_Chr4g0446191 Rosa chinensis HOM05D002463 ORTHO05D002669 1.5e-21 105.9 64 75.0
Actinidia13754 Actinidia chinensis HOM05D002463 ORTHO05D002669 2.6e-21 105.1 64 76.6
GSVIVG01010232001 Vitis vinifera HOM05D002463 ORTHO05D002669 2.6e-21 105.1 64 73.4
Potri.008G144800 Populus trichocarpa HOM05D002463 ORTHO05D002669 3.4e-21 104.8 64 76.6
FAN17G0283 Fragaria x ananassa HOM05D002463 ORTHO05D002669 7.5e-21 103.6 64 73.4
TWI53G2028 Tripterygium wilfordii HOM05D002463 ORTHO05D002669 7.5e-21 103.6 64 75.0
MD16G1007300 Malus domestica HOM05D002463 ORTHO05D002669 1.3e-20 102.8 65 76.9
TWI74G0817 Tripterygium wilfordii HOM05D002463 ORTHO05D002669 1.3e-20 102.8 64 75.0
Rhsim09G0076200 Rhododendron simsii HOM05D002463 ORTHO05D002669 1.7e-20 102.4 66 75.8
Sabra08G0109900 Salix brachista HOM05D002463 ORTHO05D002669 1.7e-20 102.4 64 75.0
Solyc01g008130.4 Solanum lycopersicum HOM05D002463 ORTHO05D002669 2.9e-20 101.7 64 73.4
Sopen01g003680 Solanum pennellii HOM05D002463 ORTHO05D002669 2.9e-20 101.7 64 73.4
vmacro10890 Vaccinium macrocarpon HOM05D002463 ORTHO05D002669 2.9e-20 101.7 65 73.8
Oeu061723.1 Olea europaea HOM05D002463 ORTHO05D002669 4.9e-20 100.9 67 73.1
Oeu044036.1 Olea europaea HOM05D002463 ORTHO05D002669 6.4e-20 100.5 66 72.7
Lsat_1_v5_gn_3_33481 Lactuca sativa HOM05D002463 ORTHO05D002669 8.3e-20 100.1 63 76.2
Potri.010G097600 Populus trichocarpa HOM05D002463 ORTHO05D002669 1.9e-19 99.0 64 73.4
PGSC0003DMG400016401 Solanum tuberosum HOM05D002463 ORTHO05D002669 1.9e-19 99.0 64 71.9
Actinidia30188 Actinidia chinensis HOM05D002463 ORTHO05D002669 2.4e-19 98.6 64 71.9
Manes.07G078200 Manihot esculenta HOM05D002463 ORTHO05D002669 2.4e-19 98.6 64 73.4
Cpa.g.sc2.110 Carica papaya HOM05D002463 ORTHO05D002669 3.2e-19 98.2 64 71.9
HanXRQChr06g0175301 Helianthus annuus HOM05D002463 ORTHO05D002669 4.1e-19 97.8 64 71.9
MBI06_g35040_MAGBIO Magnolia biondii HOM05D002463 ORTHO05D002669 5.4e-19 97.4 64 67.2
Peaxi162Scf00097g00159 Petunia axillaris HOM05D002463 ORTHO05D002669 5.4e-19 97.4 65 72.3
HanXRQChr17g0540601 Helianthus annuus HOM05D002463 ORTHO05D002669 7.1e-19 97.1 64 71.9
QL03p042157 Quercus lobata HOM05D002463 ORTHO05D002669 7.1e-19 97.1 66 72.7
Nitab4.5_0003304g0010 Nicotiana tabacum HOM05D002463 ORTHO05D002669 9.2e-19 96.7 65 69.2
ECA246G0504 Erigeron canadensis HOM05D002463 ORTHO05D002669 2.1e-18 95.5 64 71.9
Hund04297 Selenicereus undatus HOM05D002463 ORTHO05D002669 3.5e-18 94.7 64 64.1
AUR62003435 Chenopodium quinoa HOM05D002463 ORTHO05D002669 4.6e-18 94.4 70 60.0
AUR62029410 Chenopodium quinoa HOM05D002463 ORTHO05D002669 4.6e-18 94.4 70 60.0
MELO3C005206.2 Cucumis melo HOM05D002463 ORTHO05D002669 4.6e-18 94.4 63 68.3
CsaV3_5G017500 Cucumis sativus L. HOM05D002463 ORTHO05D002669 4.6e-18 94.4 63 68.3
Nitab4.5_0000069g0590 Nicotiana tabacum HOM05D002463 ORTHO05D002669 4.6e-18 94.4 64 68.8
Sabra10G0070000 Salix brachista HOM05D002463 ORTHO05D002669 4.6e-18 94.4 65 72.3
DCAR_026860 Daucus carota HOM05D002463 ORTHO05D002669 6.0e-18 94.0 65 69.2
Atru.chr11.1088 Acer truncatum HOM05D002463 ORTHO05D002669 7.8e-18 93.6 66 71.2
ClCG01G007080 Citrullus lanatus HOM05D002463 ORTHO05D002669 1.0e-17 93.2 63 66.7
Cc11_g02640 Coffea canephora HOM05D002463 ORTHO05D002669 1.0e-17 93.2 67 67.2
PGR044G0978 Punica granatum HOM05D002463 ORTHO05D002669 1.0e-17 93.2 63 68.3
Cfa003390 Carpinus fangiana HOM05D006756 ORTHO05D001869 3.0e-17 91.7 48 85.4
THA.LOC104806584 Tarenaya hassleriana HOM05D002463 ORTHO05D002669 3.0e-17 91.7 66 66.7
ATR0618G407 Amborella trichopoda HOM05D002463 ORTHO05D002669 5.1e-17 90.9 65 64.6
Aqoxy3G04213 Aquilegia oxysepala HOM05D002463 ORTHO05D002669 5.1e-17 90.9 66 62.1
Aqoxy400s001 Aquilegia oxysepala HOM05D002463 ORTHO05D002669 5.1e-17 90.9 66 62.1
MSTRG.2088 Avicennia marina HOM05D002463 ORTHO05D002669 1.1e-16 89.7 63 65.1
Migut.E00587 Erythranthe guttata HOM05D002463 ORTHO05D002669 1.1e-16 89.7 65 63.1
Sed0010931 Sechium edule HOM05D002463 ORTHO05D002669 1.1e-16 89.7 63 65.1
CANSAT78G1958 Cannabis sativa HOM05D002463 ORTHO05D002669 1.5e-16 89.4 66 65.2
Nn3g18670 Nelumbo nucifera HOM05D002463 ORTHO05D002669 1.5e-16 89.4 66 59.1
CAN.G282.76 Capsicum annuum HOM05D002463 ORTHO05D002669 5.6e-16 87.4 65 60.0
Duzib248G0885 Durio zibethinus HOM05D002463 ORTHO05D002669 5.6e-16 87.4 63 61.9
Eucgr.J01833 Eucalyptus grandis HOM05D002463 ORTHO05D002669 5.6e-16 87.4 68 64.7
Ah.03g147050 Amaranthus hybridus HOM05D002463 ORTHO05D002669 9.5e-16 86.7 63 58.7
Thecc.02G310700 Theobroma cacao HOM05D002463 ORTHO05D002669 9.5e-16 86.7 63 65.1
DCAR_030333 Daucus carota HOM05D002463 ORTHO05D002669 1.6e-15 85.9 79 55.7
Duzib268G1608 Durio zibethinus HOM05D002463 ORTHO05D002669 1.6e-15 85.9 63 65.1
EL10Ac6g15413 Beta vulgaris HOM05D002463 ORTHO05D002669 2.1e-15 85.5 63 60.3
BraA01t04153Z Brassica rapa HOM05D002463 ORTHO05D002669 2.1e-15 85.5 64 62.5
COL.COLO4_27652 Corchorus olitorius HOM05D002463 ORTHO05D002669 2.1e-15 85.5 63 58.7
HPP92_022525 Vanilla planifolia HOM05D002463 ORTHO05D002669 3.6e-15 84.7 73 60.3
Duzib251G0350 Durio zibethinus HOM05D002463 ORTHO05D002669 4.7e-15 84.3 63 63.5
SalBow2G1611 Salvia bowleyana HOM05D002463 ORTHO05D002669 4.7e-15 84.3 64 60.9
Haze_06630 Corylus avellana HOM05D002463 ORTHO05D002669 6.2e-15 84.0 42 88.1
Glyma.03G019500 Glycine max HOM05D002463 ORTHO05D002669 1.4e-14 82.8 61 63.9
BcaC09g48188 Brassica carinata HOM05D002463 ORTHO05D002669 1.8e-14 82.4 65 61.5
CDE07G2007 Ceratophyllum demersum HOM05D002463 ORTHO05D002669 1.8e-14 82.4 61 57.4
Gohir.A13G026400 Gossypium hirsutum HOM05D002463 ORTHO05D002669 3.1e-14 81.6 63 60.3
Ciclev10004570m.g Citrus clementina HOM05D002463 ORTHO05D002669 4.0e-14 81.3 66 60.6
Glyma.07G081400 Glycine max HOM05D002463 ORTHO05D002669 5.2e-14 80.9 61 62.3
Gohir.D13G025200 Gossypium hirsutum HOM05D002463 ORTHO05D002669 5.2e-14 80.9 84 52.4
Sed0016314 Sechium edule HOM05D002463 ORTHO05D002669 6.8e-14 80.5 63 58.7
PSO063G3866 Papaver somniferum HOM05D002463 ORTHO05D002669 8.9e-14 80.1 64 56.2
PSO782G4666 Papaver somniferum HOM05D002463 ORTHO05D002669 8.9e-14 80.1 64 56.2
Sp3g10130 Schrenkiella parvula HOM05D002463 ORTHO05D002669 1.2e-13 79.7 66 59.1
VMungo0331G1679 Vigna mungo HOM05D002463 ORTHO05D002669 1.5e-13 79.3 64 60.9
Zm00001eb045540 Zea mays HOM05D002463 ORTHO05D002669 1.5e-13 79.3 67 55.2
Ca_23784_v3 Cicer arietinum L. HOM05D002463 ORTHO05D002669 2.0e-13 79.0 57 63.2
Haze_06629 Corylus avellana HOM05D002463 ORTHO05D002669 2.0e-13 79.0 42 85.7
Gorai.013G028400 Gossypium raimondii HOM05D002463 ORTHO05D002669 2.0e-13 79.0 63 58.7
BolC1t05282H Brassica oleracea HOM05D002463 ORTHO05D002669 3.4e-13 78.2 65 60.0
BcaB04g21111 Brassica carinata HOM05D002463 ORTHO05D002669 4.4e-13 77.8 69 60.9
Gohir.D02G135300 Gossypium hirsutum HOM05D002463 ORTHO05D002669 4.4e-13 77.8 67 55.2
Gohir.A03G110600 Gossypium hirsutum HOM05D002463 ORTHO05D002669 5.8e-13 77.4 68 54.4
Gorai.005G151400 Gossypium raimondii HOM05D002463 ORTHO05D002669 5.8e-13 77.4 68 54.4
Carub.0003s1124 Capsella rubella HOM05D002463 ORTHO05D002669 7.6e-13 77.0 65 58.5
Gohir.A12G155400 Gossypium hirsutum HOM05D002463 ORTHO05D002669 7.6e-13 77.0 63 60.3
unitig_22.g5615 Utricularia gibba HOM05D002463 ORTHO05D002669 9.9e-13 76.6 66 54.5
Thhalv10022227m.g Eutrema salsugineum HOM05D002463 ORTHO05D002669 1.3e-12 76.3 64 56.2
Phvul.010G087800 Phaseolus vulgaris HOM05D002463 ORTHO05D002669 1.3e-12 76.3 64 57.8
CARHR086450 Cardamine hirsuta HOM05D002463 ORTHO05D002669 2.9e-12 75.1 64 56.2
Lj3g0004663 Lotus japonicus HOM05D002463 ORTHO05D002669 2.9e-12 75.1 57 61.4
Gohir.D12G158500 Gossypium hirsutum HOM05D002463 ORTHO05D002669 4.9e-12 74.3 63 58.7
Gorai.008G171400 Gossypium raimondii HOM05D002463 ORTHO05D002669 4.9e-12 74.3 63 58.7
Psat4g198160 Pisum sativum HOM05D002463 ORTHO05D002669 4.9e-12 74.3 57 59.6
AL3G23510 Arabidopsis lyrata HOM05D002463 ORTHO05D002669 8.4e-12 73.6 66 54.5
AT3G11920 Arabidopsis thaliana HOM05D002463 ORTHO05D002669 8.4e-12 73.6 68 55.9
Medtr8g033290 Medicago truncatula HOM05D002463 ORTHO05D002669 8.4e-12 73.6 57 57.9
SGA_v2.0_scaffold140G35484 Striga asiatica HOM05D002463 ORTHO05D002669 8.4e-12 73.6 66 51.5
Os10g0482900 Oryza sativa ssp. japonica HOM05D002463 ORTHO05D002669 1.4e-11 72.8 67 50.7
arahy.Tifrunner.gnm1.ann1.94R5ZM Arachis hypogaea HOM05D002463 ORTHO05D002669 4.1e-11 71.2 66 57.6
Ca_12510_v3 Cicer arietinum L. HOM05D002463 ORTHO05D002669 5.4e-11 70.9 72 51.4
Migut.O00732 Erythranthe guttata HOM05D002463 ORTHO05D002669 5.4e-11 70.9 63 55.6
arahy.Tifrunner.gnm1.ann1.XG11M2 Arachis hypogaea HOM05D002463 ORTHO05D002669 1.6e-10 69.3 67 55.2
Lj2g0027231 Lotus japonicus HOM05D002463 ORTHO05D002669 2.1e-10 68.9 56 60.7
Lalb_Chr17g0340081 Lupinus albus HOM05D002463 ORTHO05D002669 2.1e-10 68.9 66 47.0
SEGI_16976 Sequoiadendron giganteum HOM05D002463 ORTHO05D002669 2.7e-10 68.6 73 43.8
Hma1.2p1_0054F.1_g031160 Hydrangea macrophylla HOM05D002463 ORTHO05D002669 3.5e-10 68.2 48 68.8
arahy.Tifrunner.gnm1.ann1.MG346Q Arachis hypogaea HOM05D002463 ORTHO05D002669 6.0e-10 67.4 70 42.9
Medtr1g035690 Medicago truncatula HOM05D002463 ORTHO05D002669 6.0e-10 67.4 61 55.7
TPR.G14828 Trifolium pratense HOM05D002463 ORTHO05D002669 6.0e-10 67.4 59 55.9
Psat6g098280 Pisum sativum HOM05D002463 ORTHO05D002669 7.8e-10 67.0 61 55.7
Glyma.09G280900 Glycine max HOM05D002463 ORTHO05D002669 1.3e-09 66.2 56 58.9
arahy.Tifrunner.gnm1.ann1.158MUU Arachis hypogaea HOM05D002463 ORTHO05D002669 3.9e-09 64.7 70 42.9
VMungo1215G1565 Vigna mungo HOM05D002463 ORTHO05D002669 8.7e-09 63.5 60 48.3
Phvul.003G007200 Phaseolus vulgaris HOM05D002463 ORTHO05D002669 3.3e-08 61.6 69 46.4
Glyma.20G005300 Glycine max HOM05D002463 ORTHO05D002669 1.4e-06 56.2 61 47.5
CDE08G0757 Ceratophyllum demersum HOM05D004450 ORTHO05D005491 5.2e-06 54.3 71 39.4
SMO140G0031 Selaginella moellendorffii HOM05D002463 ORTHO05D002669 9.0e-06 53.5 60 35.0


User provided reference genes

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