Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 2.6e-242 841.6 430 100.0
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 2.3e-230 802.0 430 95.1
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 3.7e-196 688.3 429 81.8
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 5.7e-189 664.5 431 77.0
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.4e-187 659.8 442 75.3
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 1.2e-186 656.8 428 76.2
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 8.5e-185 650.6 433 75.3
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.1e-184 650.2 436 75.5
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 2.7e-183 645.6 441 73.2
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 6.1e-183 644.4 435 76.1
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 7.9e-183 644.0 436 75.0
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.0e-182 643.7 410 79.8
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 2.0e-181 639.4 444 74.5
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 4.4e-181 638.3 443 73.4
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 2.2e-180 636.0 429 74.4
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.8e-180 635.6 429 73.9
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 4.8e-180 634.8 442 72.2
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 8.2e-180 634.0 442 72.4
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-179 633.6 433 74.1
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 1.1e-179 633.6 442 73.3
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 2.4e-179 632.5 438 72.4
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 1.2e-178 630.2 435 73.8
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.0e-178 629.4 433 73.2
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.6e-178 629.0 429 74.4
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 5.9e-178 627.9 435 74.3
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.2e-177 625.9 435 72.0
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 3.8e-177 625.2 433 74.1
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 6.5e-177 624.4 442 71.3
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 2.5e-176 622.5 421 73.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 3.2e-176 622.1 441 70.7
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 5.5e-176 621.3 434 71.4
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 7.2e-176 620.9 443 70.7
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 1.4e-174 616.7 444 70.9
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 2.3e-174 615.9 442 71.5
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 8.8e-174 614.0 441 69.2
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 2.0e-173 612.8 435 70.8
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 3.3e-173 612.1 442 69.9
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 4.4e-173 611.7 441 69.6
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 5.7e-173 611.3 435 72.2
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.4e-173 610.9 435 72.4
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 7.4e-173 610.9 437 70.9
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 7.4e-173 610.9 436 71.3
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.7e-172 609.8 435 71.7
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.7e-172 609.8 435 70.6
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 3.7e-172 608.6 401 75.1
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 2.4e-171 605.9 442 69.2
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 3.1e-171 605.5 421 71.0
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 3.1e-171 605.5 429 71.3
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 4.1e-171 605.1 429 71.1
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 5.3e-171 604.7 455 67.5
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 7.0e-171 604.4 397 77.1
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.2e-170 603.6 423 69.7
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 2.0e-170 602.8 442 69.9
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 2.6e-170 602.4 441 68.5
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 2.6e-170 602.4 427 70.5
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 5.9e-170 601.3 417 70.7
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 1.7e-169 599.7 427 70.7
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 1.9e-168 596.3 435 68.7
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 4.2e-168 595.1 428 69.6
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 7.2e-168 594.3 359 84.7
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 2.1e-167 592.8 429 70.2
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 8.0e-167 590.9 438 68.5
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 3.0e-166 589.0 419 70.2
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 6.7e-166 587.8 436 70.4
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.2e-165 587.0 435 67.8
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.0e-165 586.3 395 73.7
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 2.8e-164 582.4 423 69.5
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 5.3e-163 578.2 430 69.1
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 7.0e-163 577.8 391 71.6
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 2.0e-162 576.2 524 59.4
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.7e-162 575.9 488 62.5
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 3.5e-162 575.5 417 70.7
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 3.5e-162 575.5 428 70.1
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.5e-162 575.5 432 68.1
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 4.5e-162 575.1 426 69.5
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 3.8e-161 572.0 413 70.9
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.9e-160 569.7 445 66.5
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.9e-160 569.7 424 66.3
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 2.5e-160 569.3 436 67.9
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 2.7e-159 565.8 399 69.2
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 2.3e-158 562.8 412 69.4
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 2.6e-157 559.3 383 69.7
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 4.4e-157 558.5 434 64.5
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 2.2e-156 556.2 429 67.1
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 5.4e-155 551.6 371 76.3
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 7.0e-155 551.2 446 66.4
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 7.0e-155 551.2 446 66.4
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 1.2e-154 550.4 418 67.2
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.3e-153 547.0 405 65.7
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 6.6e-153 544.7 385 72.7
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 9.2e-147 524.2 369 72.6
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 8.9e-142 507.7 398 63.3
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 3.2e-139 499.2 422 59.2
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 1.9e-136 490.0 326 75.5
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 2.7e-130 469.5 405 59.5
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 8.1e-127 458.0 421 57.5
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 2.4e-123 446.4 395 57.7
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.9e-120 436.8 317 69.1
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.9e-120 436.8 432 55.8
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 1.8e-118 430.3 330 68.2
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 9.9e-109 397.9 301 63.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 2.4e-107 393.3 356 62.6
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.9e-105 386.0 398 52.0
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.8e-102 377.1 262 73.7
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.2e-98 364.4 334 61.7
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 2.0e-93 347.1 380 47.6
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 9.3e-91 338.2 227 78.0
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 4.6e-90 335.9 229 78.2
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 7.4e-80 302.0 219 68.5
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.5e-69 267.7 414 41.3
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.8e-62 244.2 386 39.4
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-53 214.2 154 70.1
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 6.5e-52 209.1 120 81.7
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.6e-48 197.2 112 83.0
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.0e-44 185.3 138 68.1
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.5e-43 181.4 138 67.4
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.7e-42 176.4 138 65.2
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.7e-37 160.6 105 79.0
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 9.5e-35 152.1 103 67.0
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 2.0e-32 144.4 105 68.6
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 1.7e-31 141.4 138 56.5
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 6.8e-25 119.4 82 69.5
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 5.8e-24 116.3 68 76.5
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 2.2e-23 114.4 126 54.0
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.4e-22 111.7 86 62.8
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.9e-22 111.3 236 40.7
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.6e-21 108.2 90 61.1
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 3.5e-21 107.1 128 51.6
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.3e-20 105.1 77 63.6
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 7.3e-19 99.4 49 87.8
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 6.4e-15 86.3 51 78.4
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 4.6e-13 80.1 43 79.1
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 7.3e-11 72.8 41 82.9


User provided reference genes

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