Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 1.1e-51 206.5 108 100.0
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.0e-38 163.3 107 81.3
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.0e-38 163.3 107 81.3
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 3.4e-34 148.3 107 77.6
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.8e-30 136.0 105 72.4
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 5.1e-30 134.4 117 66.7
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 7.4e-29 130.6 107 71.0
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.3e-28 129.8 108 69.4
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.2e-28 129.0 131 60.3
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 3.7e-28 128.3 118 64.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.1e-27 126.7 109 69.7
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.8e-27 125.9 113 66.4
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 6.9e-27 124.0 117 63.2
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 9.1e-27 123.6 101 71.3
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.6e-26 122.1 108 64.8
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 7.7e-26 120.6 108 64.8
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 6.5e-25 117.5 109 67.0
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 2.5e-24 115.5 95 66.3
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 9.4e-24 113.6 108 61.1
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 9.4e-24 113.6 108 65.7
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 9.4e-24 113.6 91 68.1
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.2e-23 113.2 108 61.1
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.2e-23 113.2 108 61.1
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.2e-23 113.2 108 60.2
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.6e-23 112.8 107 59.8
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.6e-23 112.8 96 65.6
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 7.9e-23 110.5 105 61.0
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 7.9e-23 110.5 101 66.3
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 7.9e-23 110.5 128 53.1
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 7.9e-23 110.5 104 60.6
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.0e-22 110.2 120 54.2
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.0e-22 110.2 87 72.4
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.0e-22 110.2 91 65.9
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 2.3e-22 109.0 107 58.9
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.3e-22 109.0 88 68.2
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.7e-22 107.5 108 57.4
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.7e-22 107.5 101 62.4
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 8.8e-22 107.1 90 66.7
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.5e-21 106.3 103 58.3
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.0e-21 105.9 89 65.2
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 3.3e-21 105.1 108 58.3
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 5.7e-21 104.4 111 61.3
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 7.4e-21 104.0 144 47.2
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.7e-20 102.8 89 68.5
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 3.7e-20 101.7 108 56.5
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 6.3e-20 100.9 108 59.3
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 1.1e-19 100.1 107 56.1
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 3.1e-19 98.6 99 61.6
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.1e-19 98.6 108 55.6
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 4.1e-19 98.2 132 50.0
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 6.9e-19 97.4 114 53.5
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 9.1e-19 97.1 104 55.8
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 2.0e-18 95.9 108 59.3
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 2.6e-18 95.5 106 54.7
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 2.6e-18 95.5 103 54.4
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 3.4e-18 95.1 110 53.6
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 4.5e-18 94.7 108 58.3
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 4.5e-18 94.7 86 64.0
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 4.5e-18 94.7 178 41.0
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.3e-17 93.2 108 52.8
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.3e-17 93.2 90 58.9
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 2.9e-17 92.0 89 58.4
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 5.0e-17 91.3 100 58.0
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 2.5e-16 89.0 107 51.4
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.5e-16 89.0 108 51.9
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 3.2e-16 88.6 103 52.4
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 9.4e-16 87.0 107 51.4
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 1.6e-15 86.3 119 48.7
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.1e-15 85.9 106 49.1
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.6e-15 85.1 106 48.1
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.1e-15 84.3 106 50.9
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.1e-15 84.3 93 55.9
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 1.0e-14 83.6 103 49.5
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.4e-14 83.2 106 49.1
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.8e-14 82.8 106 48.1
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 2.3e-14 82.4 53 79.2
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 3.0e-14 82.0 91 53.8
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 3.9e-14 81.6 46 89.1
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 5.2e-14 81.3 108 51.9
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 6.7e-14 80.9 101 52.5
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 1.1e-13 80.1 98 52.0
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.1e-13 80.1 108 47.2
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.1e-13 80.1 107 48.6
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.1e-13 80.1 95 52.6
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.1e-13 80.1 108 50.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 1.5e-13 79.7 117 49.6
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.5e-13 79.7 45 86.7
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.5e-13 79.7 115 44.3
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.5e-13 79.7 57 75.4
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 2.0e-13 79.3 45 88.9
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.0e-13 79.3 107 49.5
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 2.0e-13 79.3 44 88.6
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 2.6e-13 79.0 101 53.5
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.6e-13 79.0 46 87.0
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 3.3e-13 78.6 101 50.5
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.3e-13 78.6 110 49.1
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 3.3e-13 78.6 107 49.5
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 7.4e-13 77.4 110 48.2
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.4e-13 77.4 46 82.6
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.4e-13 77.4 46 82.6
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.4e-13 77.4 46 82.6
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 7.4e-13 77.4 101 49.5
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 7.4e-13 77.4 95 52.6
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 9.7e-13 77.0 149 37.6
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 9.7e-13 77.0 45 84.4
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 1.3e-12 76.6 109 52.3
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 1.3e-12 76.6 78 55.1
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 1.3e-12 76.6 108 49.1
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.7e-12 76.3 45 84.4
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 3.7e-12 75.1 108 48.1
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 3.7e-12 75.1 41 87.8
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 3.7e-12 75.1 95 48.4
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 6.3e-12 74.3 44 84.1
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 6.3e-12 74.3 44 84.1
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 8.2e-12 73.9 109 49.5
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.2e-12 73.9 52 75.0
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 8.2e-12 73.9 47 78.7
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 8.2e-12 73.9 136 40.4
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.2e-12 73.9 108 46.3
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.1e-11 73.6 52 75.0
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.1e-11 73.6 45 80.0
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.4e-11 73.2 52 75.0
MELO3C032813.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.4e-11 73.2 57 70.2
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-11 73.2 82 52.4
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.4e-11 73.2 61 67.2
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.8e-11 72.8 108 48.1
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 2.4e-11 72.4 46 80.4
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 2.4e-11 72.4 52 76.9
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.1e-11 72.0 108 47.2
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 4.1e-11 71.6 104 47.1
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 4.1e-11 71.6 115 41.7
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 5.3e-11 71.2 51 72.5
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 5.3e-11 71.2 108 44.4
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 9.1e-11 70.5 45 86.7
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.2e-10 70.1 102 46.1
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.6e-10 69.7 107 45.8
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.6e-10 69.7 108 46.3
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.6e-10 69.7 82 51.2
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 2.0e-10 69.3 107 45.8
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.0e-10 69.3 102 45.1
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 4.5e-10 68.2 133 45.1
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 4.5e-10 68.2 45 77.8
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 5.9e-10 67.8 106 42.5
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.7e-10 67.4 84 48.8
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.7e-10 67.4 108 45.4
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.7e-10 67.4 108 45.4
COL.COLO4_23375 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.0e-09 67.0 45 77.8
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 1.0e-09 67.0 55 70.9
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.7e-09 66.2 92 45.7
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.2e-09 65.9 46 76.1
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 2.2e-09 65.9 91 47.3
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 2.9e-09 65.5 110 43.6
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.0e-09 64.7 108 43.5
VMungo0251G2956 Vigna mungo HOM05D000069 ORTHO05D022756 6.5e-09 64.3 51 68.6
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.5e-08 63.2 108 43.5
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.5e-08 63.2 108 42.6
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 1.5e-08 63.2 108 43.5
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.9e-08 62.8 91 46.2
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 2.5e-08 62.4 88 45.5
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.5e-08 62.4 107 43.0
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 2.5e-08 62.4 108 43.5
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 4.2e-08 61.6 108 42.6
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 5.5e-08 61.2 34 88.2
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 9.4e-08 60.5 38 81.6
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.2e-07 60.1 91 44.0
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.2e-07 60.1 108 41.7
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.7e-07 58.9 108 41.7
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 3.6e-07 58.5 108 37.0
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 3.6e-07 58.5 45 66.7
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 1.0e-06 57.0 98 41.8
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.0e-06 55.5 108 38.9
Thhalv10027508m.g Eutrema salsugineum HOM05D003821 ORTHO05D004449 4.0e-06 55.1 65 55.4
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 5.2e-06 54.7 100 38.0
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 6.7e-06 54.3 108 40.7


User provided reference genes

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