Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.5e-130 468.8 238 100.0
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.3e-123 446.4 238 94.1
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 6.9e-112 407.5 228 87.7
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-109 399.4 228 85.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.6e-108 395.2 228 85.1
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 7.9e-108 394.0 228 85.5
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.0e-107 392.1 229 85.2
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.9e-106 389.4 228 83.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 7.4e-106 387.5 228 83.3
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 7.4e-106 387.5 227 84.6
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.7e-105 386.3 228 85.1
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-105 386.3 228 83.3
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.7e-105 385.2 228 83.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 8.2e-105 384.0 227 82.8
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.3e-104 381.3 227 82.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 9.1e-104 380.6 228 82.9
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.1e-104 380.6 228 83.3
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.2e-103 380.2 228 82.9
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.6e-103 379.0 227 82.4
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.0e-102 377.1 229 81.7
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-102 376.3 237 79.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-102 375.9 228 82.9
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 2.2e-102 375.9 220 83.6
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.4e-101 373.2 227 79.3
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.5e-101 372.5 229 79.5
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 7.2e-101 370.9 227 78.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.4e-101 370.5 227 81.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.1e-100 369.4 227 79.3
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 2.1e-100 369.4 229 79.9
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-100 369.4 228 78.9
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.6e-100 368.6 228 81.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.6e-100 368.6 227 80.2
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 4.7e-100 368.2 227 80.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 7.9e-100 367.5 228 78.5
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 7.9e-100 367.5 227 79.7
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.0e-99 367.1 227 79.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.8e-99 366.3 228 78.9
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.9e-99 365.2 232 78.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 3.9e-99 365.2 230 77.0
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.1e-99 364.8 236 75.0
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 5.1e-99 364.8 228 78.5
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 6.7e-99 364.4 228 75.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 6.7e-99 364.4 228 76.8
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.5e-98 363.2 232 75.9
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.5e-98 363.2 227 78.9
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.6e-98 362.5 227 78.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 4.4e-98 361.7 227 80.6
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.4e-98 361.7 228 78.9
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 7.4e-98 360.9 232 76.3
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 7.4e-98 360.9 222 81.1
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 9.7e-98 360.5 226 78.3
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.7e-98 360.5 228 79.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.3e-97 360.1 230 78.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.8e-97 359.0 231 75.8
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 4.8e-97 358.2 227 78.0
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 6.3e-97 357.8 228 74.6
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.4e-96 356.7 227 76.7
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-96 356.7 228 73.2
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.4e-96 356.7 229 76.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.8e-96 356.3 227 77.5
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.4e-96 355.9 233 76.4
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.4e-96 355.9 227 77.1
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.1e-96 355.5 229 76.9
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 7.0e-96 354.4 224 75.4
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 9.1e-96 354.0 224 76.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.6e-95 352.4 227 76.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.4e-95 352.1 212 82.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 4.5e-95 351.7 228 77.2
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.5e-95 351.7 229 75.5
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 4.5e-95 351.7 268 67.9
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 5.9e-95 351.3 227 75.8
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 5.9e-95 351.3 232 74.6
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 7.7e-95 350.9 232 74.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.7e-95 350.9 227 76.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.0e-94 350.5 218 81.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.3e-94 350.1 227 76.2
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.9e-94 349.0 232 74.1
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 6.5e-94 347.8 232 73.7
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.5e-94 347.4 202 84.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.4e-93 346.7 228 75.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 4.2e-93 345.1 224 74.1
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 7.2e-93 344.4 237 71.7
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 9.4e-93 344.0 229 75.1
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.7e-92 342.4 228 75.0
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.6e-92 342.0 225 74.2
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.7e-92 341.7 227 74.9
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.7e-92 341.7 228 75.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 6.1e-92 341.3 230 73.9
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 8.0e-92 340.9 232 71.6
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.0e-91 340.5 228 75.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-91 340.1 223 76.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.8e-91 339.7 228 74.6
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.0e-91 339.0 228 72.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.7e-91 337.8 227 74.4
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 6.7e-91 337.8 229 73.4
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.7e-91 337.8 227 71.4
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-90 337.0 230 73.0
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.5e-90 336.7 232 70.7
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.0e-90 336.3 310 58.7
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.3e-90 335.5 232 70.7
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-89 333.6 228 73.2
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.3e-89 333.6 232 70.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.2e-89 332.8 229 72.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.8e-89 332.4 228 70.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 3.7e-89 332.0 229 70.7
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 8.2e-89 330.9 229 70.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-88 330.5 229 70.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-88 330.1 229 69.9
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 3.1e-88 328.9 228 70.6
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.1e-88 328.6 229 70.3
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-87 326.6 229 69.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 5.9e-87 324.7 232 69.0
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-86 322.4 231 72.3
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 6.5e-86 321.2 232 67.7
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 9.4e-85 317.4 209 74.6
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.1e-84 316.2 232 67.2
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.7e-84 315.8 199 78.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 8.0e-84 314.3 227 66.5
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-83 313.2 230 70.0
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.7e-81 306.6 194 78.4
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.2e-81 306.2 221 67.9
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.8e-81 305.8 231 65.8
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.8e-81 305.8 204 74.0
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 3.7e-81 305.4 227 64.3
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.7e-79 297.7 203 74.4
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.5e-77 292.7 195 73.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.5e-77 292.7 224 66.5
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.1e-72 275.8 178 78.7
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.5e-69 265.0 242 58.3
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 4.4e-66 255.4 148 82.4
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.7e-63 246.1 215 61.4
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 5.0e-62 241.9 220 56.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 6.6e-62 241.5 133 87.2
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.1e-61 240.7 182 66.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-61 240.4 144 81.2
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.2e-60 237.3 224 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 5.8e-58 228.4 221 52.5
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.2e-56 222.6 230 50.0
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.2e-56 221.1 124 86.3
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 3.6e-52 209.1 144 73.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.3e-51 206.5 172 64.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.1e-51 206.1 144 71.5
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-48 197.2 146 65.1
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-46 190.7 119 75.6
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.5e-45 186.4 135 71.1
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 5.2e-43 178.7 142 59.9
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 4.4e-42 175.6 147 61.2
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 4.4e-42 175.6 134 65.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.9e-41 172.9 191 48.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 7.1e-40 168.3 126 66.7
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.6e-36 157.1 85 88.2
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 6.2e-36 155.2 133 59.4
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 8.1e-36 154.8 191 47.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.8e-35 153.7 88 86.4
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 6.8e-35 151.8 185 44.3
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.9e-33 146.4 97 74.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 4.2e-32 142.5 109 66.1
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 7.8e-31 138.3 106 65.1
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.3e-30 136.7 102 67.6
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.0e-30 136.3 96 68.8
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.5e-29 133.3 91 75.8
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 5.6e-29 132.1 85 77.6
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.3e-29 131.7 85 72.9
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.1e-28 130.2 69 92.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.8e-28 129.8 82 76.8
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.5e-26 124.0 95 66.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 9.9e-26 121.3 77 77.9
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-25 120.9 79 73.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 3.8e-25 119.4 100 65.0
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.8e-25 119.4 85 69.4
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-23 113.6 85 65.9
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 3.5e-23 112.8 147 44.2
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-22 110.2 85 68.2
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 4.5e-18 95.9 63 73.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.3e-17 94.4 61 75.4
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.4e-16 89.0 68 67.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 5.4e-16 89.0 210 29.5
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-15 87.4 60 71.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.0e-14 84.7 51 84.3
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.3e-12 77.8 219 28.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 5.3e-11 72.4 67 53.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 9.0e-11 71.6 49 65.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.2e-10 71.2 185 28.6


User provided reference genes

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