Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1961.0 1011 100.0
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1775.0 1010 89.8
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1770.0 1016 89.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1697.2 895 96.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1628.2 1014 81.7
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1625.5 1012 81.9
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1600.9 1009 79.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1594.7 1011 80.0
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1589.3 1015 79.4
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1588.5 1016 79.5
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1587.8 1012 78.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1585.5 1011 79.2
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1583.5 1016 79.7
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1582.4 1013 80.0
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1577.8 1015 79.7
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1571.2 1006 77.9
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1569.3 1015 79.3
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1567.4 1009 78.6
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1563.5 1016 79.4
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1563.1 1006 78.5
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1557.7 1001 77.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1557.3 1006 78.3
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1549.3 1011 79.0
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1546.9 1011 78.4
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1543.9 1013 77.9
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1534.6 1031 76.6
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1528.5 1028 77.5
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1525.4 1010 76.4
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1523.5 1015 77.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1521.1 1001 76.5
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1510.0 1013 75.7
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1506.1 1014 76.1
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1505.7 1010 76.5
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1502.6 1010 76.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1500.0 1016 74.8
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1495.3 1006 76.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1489.2 1018 75.3
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1488.0 1023 75.3
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1486.9 1118 69.8
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1481.1 1024 75.0
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1481.1 1013 74.6
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1480.7 1024 74.7
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1477.6 1024 75.0
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1464.1 1050 72.9
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1457.2 1057 70.8
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1452.6 1014 73.2
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1441.4 1014 73.9
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1439.9 1011 72.6
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1439.9 1014 73.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1438.3 1018 72.5
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1433.3 1013 73.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1427.9 1008 72.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1424.8 1009 72.3
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1424.8 1002 69.8
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1421.4 1015 72.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1419.1 1011 72.5
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1419.1 1010 71.1
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1412.1 1018 68.8
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1411.7 1002 70.1
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1407.9 1009 70.8
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1404.0 1013 69.7
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1403.3 1003 70.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1399.0 1003 70.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1398.3 1009 71.7
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1016 72.2
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1395.6 1005 70.6
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1389.4 1015 72.5
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1006 69.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1376.3 1016 71.4
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1375.9 1004 69.0
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1375.5 1034 67.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1373.6 1006 68.9
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1372.5 1012 70.1
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1370.5 1012 69.1
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1370.5 1012 69.7
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1365.1 1010 68.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1365.1 1013 68.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1365.1 996 70.5
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1361.7 1002 68.1
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1360.9 1011 68.5
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1358.6 1013 68.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1357.8 1003 68.0
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1356.3 1020 69.1
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1354.3 1002 67.7
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1349.3 1004 67.5
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1348.6 1002 67.4
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1347.0 1004 67.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1341.3 1014 66.9
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1336.6 966 69.2
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1328.2 1253 56.6
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1322.4 1007 68.1
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1308.1 797 82.1
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1307.0 970 68.5
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1283.1 874 77.2
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1010 64.2
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 981 66.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1255.4 912 68.4
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1248.8 998 65.8
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1234.6 1007 62.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1227.6 986 62.9
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1220.7 1013 61.4
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1177.5 797 72.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1149.8 1008 60.6
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1145.2 1004 62.3
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1098.2 1006 58.4
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1082.0 925 61.2
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1080.5 716 76.5
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1075.5 667 84.9
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.1e-307 1057.4 651 80.8
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 2.8e-303 1045.4 969 55.1
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 2.5e-288 995.7 964 53.1
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.3e-281 972.6 754 67.6
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.7e-268 929.9 934 51.1
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 4.8e-255 885.2 973 49.0
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.3e-246 855.1 579 75.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-212 743.4 432 83.6
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-212 743.4 432 83.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.8e-209 733.8 989 42.5
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 4.8e-146 523.1 283 90.8
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.6e-104 385.2 400 55.5
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 7.6e-67 260.0 201 65.2
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.9e-62 245.4 205 59.5
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 5.8e-59 233.8 211 58.8
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.5e-56 224.6 146 74.0
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.0e-55 221.5 527 29.4
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.8e-53 214.9 165 69.1
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 9.3e-49 199.9 172 62.2
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 8.2e-45 186.8 174 57.5
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.2e-42 178.7 174 56.9
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.9e-33 149.1 601 24.8
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 5.7e-30 137.5 335 29.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.7e-29 134.8 121 58.7
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 2.5e-25 122.1 97 62.9
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.7e-24 117.9 107 55.1
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.8e-20 105.9 96 58.3
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 2.5e-17 95.5 74 64.9
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 6.1e-16 90.9 302 29.1
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.9e-15 88.2 227 28.6
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.7e-15 87.4 80 66.2
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.8e-12 79.3 68 60.3
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.3e-10 73.2 89 48.3
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.2e-09 68.6 122 39.3
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.2e-09 68.2 76 63.2
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 5.5e-09 67.8 72 51.4
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 7.2e-09 67.4 50 50.0
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 3.6e-08 65.1 48 66.7
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 6.7e-07 60.8 83 44.6
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.5e-06 59.7 115 35.7
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.3e-06 58.5 54 53.7
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 7.5e-06 57.4 50 52.0


User provided reference genes

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