Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 0.0e+00 1227.6 653 100.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.1e-292 1007.7 664 86.1
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 5.1e-173 612.1 703 57.5
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 6.0e-166 588.6 778 51.3
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 9.0e-162 574.7 711 54.1
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.5e-119 434.5 745 43.9
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.5e-119 433.7 686 45.6
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.7e-118 430.3 706 45.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.6e-118 429.9 681 45.5
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.4e-114 417.2 692 45.8
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.1e-114 416.8 761 42.4
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.2e-113 414.8 688 45.2
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.6e-113 413.7 637 45.8
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 5.9e-113 412.5 697 45.2
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 5.9e-113 412.5 739 43.3
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.2e-112 410.6 677 46.1
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.8e-112 409.8 748 42.1
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.5e-111 407.1 685 44.7
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.5e-111 406.0 686 44.3
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.6e-110 403.3 686 45.3
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 4.7e-110 402.9 699 43.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.0e-109 401.7 673 46.1
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 4.0e-109 399.8 873 37.9
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-108 397.5 690 45.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.5e-108 395.6 669 44.7
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 3.7e-107 393.3 683 43.9
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 6.3e-107 392.5 687 43.7
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 3.2e-103 380.2 710 43.0
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.2e-103 379.8 700 42.4
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 8.8e-101 372.1 714 39.6
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.2e-100 371.7 689 43.1
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.2e-100 371.7 735 40.5
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.0e-100 370.9 398 58.5
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-100 370.5 673 43.5
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.4e-100 370.2 664 44.0
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.3e-99 368.2 697 42.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.7e-99 367.9 668 43.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.1e-98 363.2 675 43.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 9.1e-98 362.1 742 39.6
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 9.1e-98 362.1 747 40.6
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.2e-97 361.7 675 42.8
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 5.9e-97 359.4 666 42.2
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 5.9e-97 359.4 661 41.5
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.3e-96 358.2 697 41.8
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.3e-96 358.2 663 43.1
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.3e-96 357.5 681 41.0
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 4.2e-95 353.2 670 41.2
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.6e-94 351.3 707 40.3
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.6e-94 350.1 713 39.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 4.7e-94 349.7 707 39.9
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.1e-94 349.4 361 57.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.0e-94 349.0 674 42.4
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 4.0e-93 346.7 681 40.5
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 3.4e-92 343.6 653 40.6
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 9.8e-92 342.0 686 40.1
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.2e-91 340.9 745 40.1
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 3.7e-91 340.1 689 39.9
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.8e-90 337.8 682 41.2
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.2e-90 337.0 698 40.3
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 9.2e-90 335.5 697 39.6
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.5e-89 333.6 609 44.3
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.6e-89 333.2 667 40.2
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.0e-88 332.0 647 39.1
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 5.0e-88 329.7 674 40.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 6.6e-88 329.3 669 40.4
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 6.6e-88 329.3 693 39.5
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.3e-87 327.0 700 38.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 7.3e-87 325.9 290 67.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 7.3e-87 325.9 669 38.7
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.1e-86 324.3 660 39.1
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.1e-86 324.3 704 38.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.0e-85 322.0 677 38.6
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.8e-85 321.2 665 38.5
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.0e-85 320.1 667 38.8
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 5.2e-85 319.7 649 41.6
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.3e-83 315.1 714 38.4
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.3e-83 315.1 682 38.3
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.9e-83 313.9 664 38.3
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.3e-83 312.4 678 38.1
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.4e-82 311.6 669 39.5
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.4e-82 310.8 675 40.7
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.4e-82 309.7 361 54.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 9.2e-82 308.9 677 37.1
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.2e-82 308.9 668 39.1
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.6e-81 306.6 657 37.3
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 4.6e-81 306.6 679 37.4
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 5.0e-80 303.1 658 37.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.0e-80 303.1 686 37.2
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 6.6e-80 302.8 654 36.7
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.1e-79 302.0 654 36.7
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.9e-79 301.2 458 47.8
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.3e-79 300.4 676 38.0
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.2e-78 298.5 683 36.3
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.6e-78 297.0 568 40.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.7e-78 296.6 682 37.0
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.3e-75 288.5 681 36.9
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.9e-74 284.6 670 37.3
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 9.2e-74 282.3 686 37.3
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 3.5e-73 280.4 668 37.1
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 6.0e-73 279.6 719 33.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-72 278.9 659 36.9
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.7e-72 278.1 718 34.1
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 5.1e-72 276.6 382 48.7
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.6e-72 275.8 695 37.0
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 3.3e-71 273.9 658 37.5
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.2e-70 271.9 675 36.7
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.8e-70 270.8 293 60.4
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.8e-70 270.8 293 60.4
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 5.2e-69 266.5 615 37.1
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.5e-68 265.0 655 35.9
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 9.9e-68 262.3 725 33.8
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.9e-67 260.8 642 35.2
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.4e-66 258.5 658 35.4
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.4e-66 258.5 675 35.7
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.0e-64 252.3 675 33.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.0e-64 250.8 666 36.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 5.1e-64 250.0 507 39.3
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.5e-63 248.4 238 65.5
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.5e-63 248.4 494 39.7
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.9e-63 248.1 238 65.5
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.5e-63 247.7 533 39.2
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 9.6e-63 245.7 660 35.2
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.6e-62 243.8 285 52.6
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 8.9e-61 239.2 677 34.4
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 2.0e-60 238.0 669 33.6
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.0e-60 238.0 662 33.8
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.3e-59 235.3 654 33.8
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 4.9e-59 233.4 582 35.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.4e-58 229.9 670 33.4
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 2.5e-55 221.1 475 38.7
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 5.6e-55 219.9 624 34.0
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 5.8e-52 209.9 674 30.4
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 5.8e-52 209.9 607 33.3
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 7.3e-47 193.0 667 31.5
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 9.0e-45 186.0 237 48.9
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.5e-44 185.3 584 30.1
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.2e-43 181.4 192 60.9
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.8e-43 180.6 261 49.8
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.4e-42 178.7 602 28.6
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.1e-42 176.4 615 30.9
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 6.7e-40 169.9 394 36.8
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-37 161.8 287 39.0
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.4e-37 161.4 285 41.1
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 3.5e-33 147.5 291 37.1
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.0e-32 146.0 249 40.6
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 2.1e-30 138.3 411 29.0
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.8e-30 137.9 190 45.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.3e-27 129.0 198 48.5
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 7.2e-26 123.2 184 45.7
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 6.1e-25 120.2 247 38.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 2.3e-24 118.2 135 55.6
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.0e-24 117.9 174 44.3
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 5.1e-24 117.1 578 25.8
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-22 112.5 263 38.4
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.8e-21 108.6 79 73.4
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 5.9e-20 103.6 337 33.2
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.0e-19 102.8 261 35.2
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.1e-17 95.1 159 42.1
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.9e-17 93.2 76 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.4e-16 92.4 162 38.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 1.8e-16 92.0 91 53.8
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 6.7e-16 90.1 175 39.4
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.4e-13 82.4 57 68.4
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.6e-12 78.2 143 39.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.9e-11 74.7 143 39.9
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 2.9e-11 74.7 201 34.8
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 8.5e-11 73.2 68 63.2
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 9.4e-10 69.7 389 24.7
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.2e-09 69.3 111 44.1
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.6e-09 68.9 58 60.3
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.6e-09 68.9 58 60.3
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.7e-09 68.2 117 40.2
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.6e-09 67.8 203 31.0
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.0e-08 66.2 78 55.1
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.4e-08 65.9 230 30.0
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 8.8e-08 63.2 71 57.7
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.1e-07 62.8 261 26.8
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.3e-06 59.3 66 57.6
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 3.7e-06 57.8 71 49.3
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 8.2e-06 56.6 136 39.0


User provided reference genes

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