Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1846.2 962 100.0
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1711.0 963 93.7
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1445.3 963 79.3
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1369.4 960 76.5
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1253.4 967 70.2
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1230.7 980 67.7
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1208.7 967 67.4
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1204.5 963 67.3
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1203.3 971 68.2
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1199.5 970 66.6
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1198.7 967 67.2
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1184.5 966 66.9
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1182.9 967 66.3
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1181.0 968 66.1
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1180.6 967 66.2
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1179.5 969 66.3
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1177.9 964 66.4
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 0.0e+00 1177.5 969 65.4
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1176.4 964 66.5
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1174.5 953 66.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1173.7 957 65.9
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1164.8 969 65.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1164.4 969 66.0
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1162.5 968 64.4
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 0.0e+00 1161.0 950 64.8
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1159.8 971 65.8
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1154.0 971 64.0
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 0.0e+00 1149.8 952 65.1
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1148.7 958 65.3
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1130.5 927 65.5
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1130.2 968 63.8
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 0.0e+00 1129.8 969 63.8
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 0.0e+00 1122.8 968 64.0
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1118.6 969 63.8
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 0.0e+00 1117.4 971 62.5
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1114.0 947 64.7
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 0.0e+00 1081.6 943 62.5
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1078.2 968 62.5
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 0.0e+00 1077.4 970 60.0
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 2.0e-311 1072.4 973 62.3
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 5.9e-311 1070.8 977 61.5
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.9e-310 1068.5 962 60.1
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 5.0e-310 1067.8 907 63.9
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.1e-309 1066.6 941 60.3
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 5.7e-306 1054.3 908 63.1
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 2.2e-305 1052.4 927 61.6
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 2.2e-305 1052.4 924 63.0
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 4.8e-305 1051.2 971 59.6
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 8.2e-305 1050.4 927 62.7
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.4e-304 1049.7 963 60.0
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.4e-304 1048.9 936 61.6
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 4.1e-304 1048.1 967 59.8
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 9.1e-304 1047.0 933 61.1
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 3.5e-303 1045.0 1042 57.8
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 4.2e-301 1038.1 973 59.4
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 9.4e-301 1036.9 935 59.1
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.7e-297 1026.2 912 60.5
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.0e-294 1016.9 921 59.1
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 1.9e-293 1012.7 909 61.1
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 9.4e-293 1010.4 913 59.1
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 9.4e-293 1010.4 930 59.1
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.3e-291 1005.7 877 62.8
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 2.3e-291 1005.7 962 57.1
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 5.2e-291 1004.6 962 57.5
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 5.7e-290 1001.1 973 57.8
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 5.7e-290 1001.1 751 69.6
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 2.2e-289 999.2 934 58.0
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.8e-289 998.8 954 57.3
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.4e-288 996.5 931 57.5
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.0e-286 990.3 934 57.2
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.1e-285 986.9 837 63.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 2.5e-285 985.7 933 58.6
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 8.0e-284 980.7 933 58.3
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 8.8e-283 977.2 911 58.5
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.5e-282 976.5 959 56.4
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.6e-282 975.7 932 57.8
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.6e-282 975.7 932 57.8
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 3.7e-281 971.8 965 56.9
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 8.3e-281 970.7 976 57.3
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 4.1e-280 968.4 839 63.4
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.0e-279 966.1 955 55.9
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 8.6e-278 960.7 932 55.9
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.8e-275 953.0 897 57.3
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 2.0e-271 939.5 946 54.7
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 2.7e-271 939.1 859 62.0
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.9e-257 892.5 960 52.1
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 9.2e-256 887.5 896 55.0
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 2.7e-255 885.9 896 53.5
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.0e-254 884.0 697 67.4
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 3.8e-249 865.5 931 52.3
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.0e-246 857.4 910 52.3
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 3.3e-245 852.4 827 56.7
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 2.1e-236 823.2 967 51.4
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 3.9e-230 802.4 841 52.4
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 7.9e-223 778.1 550 72.7
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 7.9e-207 724.9 711 56.7
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 2.5e-205 719.9 552 67.6
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-201 707.2 713 57.8
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 1.3e-193 681.0 659 54.5
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 7.7e-186 655.2 930 42.2
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.0e-185 654.8 804 50.9
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 5.5e-184 649.0 478 69.9
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 4.4e-181 639.4 925 42.7
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.6e-175 619.8 935 39.6
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 4.7e-175 619.4 932 39.2
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 4.0e-150 536.6 486 61.9
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.1e-147 528.5 904 38.2
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 8.4e-132 475.7 452 58.0
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.9e-110 402.9 445 53.3
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 9.9e-109 399.1 992 32.2
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 5.5e-107 393.3 310 65.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 6.7e-105 386.3 961 29.9
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.6e-104 383.3 349 57.3
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-103 381.7 290 66.6
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.5e-92 342.8 472 44.7
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 5.1e-89 333.6 971 27.9
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 6.7e-89 333.2 402 52.7
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 2.5e-88 331.3 267 64.4
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 1.3e-87 328.9 992 28.2
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 7.2e-75 286.6 505 42.0
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 7.2e-75 286.6 219 69.9
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 9.7e-72 276.2 256 59.4
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-62 245.7 419 42.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.9e-59 235.3 182 65.9
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 7.5e-56 223.4 194 60.8
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 2.8e-55 221.5 163 69.3
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.8e-55 220.7 266 45.1
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.0e-52 213.0 427 37.2
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-43 183.0 133 70.7
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.6e-40 171.8 129 70.5
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 4.9e-39 167.5 133 64.7
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.6e-35 154.1 177 43.5
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.2e-34 152.9 102 77.5
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 6.8e-33 147.1 164 52.4
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.6e-29 136.0 97 75.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 6.0e-29 134.0 117 59.8
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.8e-18 98.6 197 28.9
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.4e-17 96.3 63 77.8
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 2.4e-17 95.5 151 46.4
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 2.0e-16 92.4 92 57.6
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.4e-16 91.7 177 39.5
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 3.2e-14 85.1 368 28.3
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.6e-13 82.8 68 64.7
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.1e-13 82.4 48 81.2
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.1e-11 76.6 105 45.7
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.3e-11 75.1 124 41.1
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 2.2e-07 62.4 60 53.3


User provided reference genes

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