Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.1e-215 753.1 378 100.0
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 3.7e-107 392.5 225 91.6
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.3e-101 373.2 225 85.8
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.5e-100 369.8 225 83.1
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 7.4e-100 368.2 225 83.1
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.3e-99 367.5 225 82.7
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.6e-99 367.1 225 82.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.1e-99 366.7 226 83.6
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.1e-99 366.7 256 77.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.4e-98 364.0 225 81.3
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.1e-98 362.5 225 82.7
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.3e-98 362.1 225 83.1
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 9.0e-98 361.3 225 82.2
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.0e-97 360.1 225 81.3
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-97 360.1 226 82.3
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.6e-97 359.8 225 83.1
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.6e-97 359.8 226 82.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.5e-97 359.0 225 81.8
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.3e-96 357.5 225 81.3
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.2e-96 356.7 225 80.0
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.2e-96 356.7 225 81.8
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 6.5e-96 355.1 225 82.2
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 6.5e-96 355.1 225 80.9
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 8.5e-96 354.8 225 79.6
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 8.5e-96 354.8 225 78.7
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.2e-95 352.4 257 72.4
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 5.5e-95 352.1 225 79.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.2e-94 350.9 225 80.4
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.1e-94 350.1 225 80.0
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-94 349.7 225 78.2
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 4.6e-94 349.0 224 79.9
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 7.9e-94 348.2 217 80.6
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.0e-93 347.8 225 78.2
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.0e-93 347.8 225 79.6
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.3e-93 347.4 225 77.3
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.3e-93 347.4 225 80.4
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.8e-93 347.1 225 77.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.3e-93 346.7 225 77.8
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.3e-93 346.7 225 77.8
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.3e-93 346.7 225 77.3
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 3.9e-93 345.9 234 76.5
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 5.1e-93 345.5 225 77.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 5.1e-93 345.5 226 79.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 6.7e-93 345.1 226 79.2
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.7e-93 344.7 227 78.4
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.1e-92 344.4 217 80.2
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.1e-92 344.4 225 78.2
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.1e-92 344.4 214 82.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.5e-92 344.0 200 85.5
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.5e-92 344.0 225 78.7
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.5e-92 343.2 227 77.1
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.3e-92 342.8 225 76.9
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 3.3e-92 342.8 225 78.2
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.3e-92 342.8 226 75.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.3e-92 342.4 224 79.0
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 4.3e-92 342.4 227 78.4
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.7e-92 342.0 227 78.4
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 7.4e-92 341.7 231 77.1
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 7.4e-92 341.7 227 78.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 7.4e-92 341.7 225 77.3
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 9.7e-92 341.3 225 76.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.3e-91 340.9 218 80.7
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.3e-91 340.9 227 78.4
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.6e-91 340.5 229 75.5
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.6e-91 340.5 225 78.7
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.6e-91 340.5 224 77.2
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.2e-91 340.1 225 76.4
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.2e-91 340.1 225 79.1
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.7e-91 339.3 225 76.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.8e-91 339.0 225 76.4
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 4.8e-91 339.0 225 78.2
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 8.2e-91 338.2 224 78.1
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 8.2e-91 338.2 225 76.4
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 8.2e-91 338.2 226 76.5
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 8.2e-91 338.2 225 76.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.1e-90 337.8 225 75.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.1e-90 337.8 227 74.4
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.1e-90 337.8 226 77.0
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.4e-90 337.4 225 76.0
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.4e-90 337.4 225 77.3
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.4e-90 337.4 227 77.5
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.8e-90 337.0 225 77.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 5.3e-90 335.5 225 74.7
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 5.3e-90 335.5 225 76.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.0e-89 333.6 231 75.3
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 3.4e-89 332.8 225 76.4
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.5e-89 332.4 218 79.8
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.7e-88 330.5 200 81.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.9e-88 329.7 216 76.4
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.8e-88 329.3 214 78.5
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 5.0e-88 328.9 225 75.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 6.5e-88 328.6 225 73.3
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.9e-87 327.0 226 75.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.9e-87 327.0 225 75.6
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.2e-87 326.2 242 72.3
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 5.5e-87 325.5 223 74.4
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 5.5e-87 325.5 214 77.1
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 7.2e-87 325.1 214 76.6
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 7.2e-87 325.1 189 85.2
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 9.4e-87 324.7 225 74.7
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.2e-86 324.3 189 83.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.6e-86 322.8 214 76.6
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.8e-85 320.5 225 72.9
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.3e-85 320.1 263 66.9
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.0e-85 319.7 214 77.1
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 3.0e-85 319.7 214 77.1
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.1e-84 317.8 215 76.3
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.7e-83 313.9 214 75.7
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.8e-83 313.2 183 86.3
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 3.7e-83 312.8 237 69.2
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 8.2e-83 311.6 215 74.9
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.8e-82 310.5 214 72.9
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 6.9e-82 308.5 190 82.1
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 5.9e-81 305.4 203 78.3
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.0e-80 304.7 225 72.0
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 4.7e-78 295.8 195 77.4
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.5e-76 290.8 212 69.8
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 7.4e-76 288.5 232 65.1
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 5.3e-74 282.3 191 75.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-72 277.3 162 84.6
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.7e-72 277.3 192 75.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.0e-72 275.8 196 71.4
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.2e-71 273.1 162 82.1
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.8e-69 267.3 160 80.6
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 2.8e-67 260.0 195 71.3
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 3.7e-67 259.6 226 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 3.1e-66 256.5 189 68.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.0e-65 253.8 150 82.0
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.3e-64 251.1 227 63.9
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.7e-64 250.8 224 62.5
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.9e-63 247.3 216 60.6
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.3e-61 240.4 214 60.7
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 5.5e-55 219.2 153 72.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.8e-54 216.9 235 50.6
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.5e-52 211.1 154 72.1
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 2.5e-47 193.7 190 53.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 9.5e-47 191.8 159 61.6
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.3e-43 181.4 201 54.7
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.0e-40 170.2 115 74.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 3.9e-40 169.9 100 79.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-30 138.3 109 67.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.6e-30 136.7 108 67.6
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.1e-29 135.2 92 70.7
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 6.4e-27 125.9 135 54.1
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.7e-19 101.3 89 61.8
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 6.4e-19 99.4 63 73.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-18 98.6 51 94.1
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.0e-17 92.8 113 50.4
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 8.7e-16 89.0 97 50.5
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.4e-13 81.6 68 60.3
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.5e-12 78.2 208 30.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.6e-12 77.4 114 40.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.0e-08 63.9 63 57.1


User provided reference genes

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