Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 7.5e-242 840.1 429 100.0
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.8e-227 792.3 429 94.6
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.8e-188 662.1 429 78.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.4e-187 659.8 428 78.5
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.6e-149 532.7 429 63.9
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 3.7e-148 528.9 430 63.5
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 4.8e-148 528.5 429 64.1
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.2e-146 523.9 429 62.0
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 4.2e-144 515.4 443 61.2
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.4e-142 510.4 430 62.8
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 4.0e-142 508.8 431 61.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.1e-139 499.2 429 60.1
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.6e-138 496.9 430 59.5
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.7e-138 496.1 430 60.9
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.0e-137 494.2 429 61.3
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-136 489.2 427 59.5
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 3.3e-136 489.2 429 60.1
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.6e-135 485.7 423 59.1
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 6.1e-135 485.0 430 59.5
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 8.0e-135 484.6 427 59.0
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 8.9e-134 481.1 441 61.5
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.2e-133 480.7 431 58.9
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-133 479.9 424 57.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.2e-130 470.7 431 57.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.6e-130 470.3 428 58.2
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-130 469.9 427 57.8
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 6.0e-130 468.4 442 59.5
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.0e-129 467.6 429 54.5
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 3.9e-129 465.7 430 56.0
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 8.6e-129 464.5 378 64.3
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 5.6e-128 461.8 426 56.3
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 8.0e-127 458.0 429 55.7
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.4e-126 457.2 432 57.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.5e-125 453.8 429 57.1
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.4e-125 452.6 429 56.2
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.2e-124 449.9 430 56.7
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 8.3e-124 448.0 431 55.2
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 2.4e-123 446.4 431 57.1
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 5.4e-123 445.3 394 59.9
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.0e-122 441.8 402 61.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 6.6e-121 438.3 429 55.9
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 8.6e-121 438.0 429 53.8
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 8.6e-121 438.0 429 52.9
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.5e-120 437.2 429 55.2
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.5e-120 437.2 432 56.7
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.9e-120 436.8 430 53.0
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.9e-120 436.8 427 56.2
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 5.6e-120 435.3 394 58.4
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 7.3e-120 434.9 378 59.0
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.6e-119 433.7 429 52.7
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 6.2e-119 431.8 430 52.6
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 8.1e-119 431.4 433 57.3
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.1e-118 429.5 422 55.2
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 6.8e-118 428.3 429 52.7
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.2e-117 427.6 430 52.1
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.0e-117 426.8 430 52.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 2.0e-117 426.8 430 54.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.2e-115 419.5 422 54.0
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 4.1e-115 419.1 431 54.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 2.1e-114 416.8 394 55.6
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.7e-114 416.4 422 53.6
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 3.5e-114 416.0 434 52.1
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.0e-113 414.5 434 51.8
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.3e-113 413.3 432 50.9
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.0e-113 412.9 429 52.4
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 3.9e-113 412.5 430 49.8
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.1e-113 412.1 429 52.4
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.5e-112 410.6 431 53.6
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.3e-112 409.5 431 53.4
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.3e-112 409.1 422 53.6
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 9.5e-112 407.9 422 53.6
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.6e-111 407.1 433 50.6
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.1e-111 406.8 433 51.3
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.1e-111 406.8 470 48.1
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 2.8e-111 406.4 430 49.1
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 3.6e-111 406.0 422 52.8
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 4.7e-111 405.6 422 53.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 8.1e-111 404.8 434 50.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-110 403.7 420 56.2
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.0e-109 400.2 431 52.7
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 4.4e-109 399.1 438 49.8
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.7e-108 397.1 429 52.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.7e-108 397.1 431 51.5
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 4.9e-108 395.6 331 61.9
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.1e-107 394.4 424 51.7
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-106 390.6 424 51.4
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.7e-106 389.8 428 48.1
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 4.6e-106 389.0 368 56.8
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 6.0e-106 388.7 425 49.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.3e-105 387.5 432 49.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.0e-105 386.3 423 50.6
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 6.6e-105 385.2 377 54.6
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 2.1e-103 380.2 424 50.7
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.0e-102 375.9 424 50.5
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 6.9e-102 375.2 467 46.3
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.4e-99 367.5 471 45.6
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 3.9e-97 359.4 422 48.3
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 6.6e-97 358.6 390 50.8
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 4.3e-96 355.9 430 47.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 4.3e-96 355.9 443 47.4
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.1e-94 351.3 396 47.7
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 2.0e-93 347.1 428 47.0
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 6.4e-92 342.0 422 46.0
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.6e-90 337.4 378 51.3
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 5.1e-89 332.4 433 44.1
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 2.1e-87 327.0 377 49.9
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 5.3e-78 295.8 430 40.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.4e-77 293.1 430 40.5
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 4.2e-75 286.2 346 50.3
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 5.5e-75 285.8 413 40.9
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 9.0e-70 268.5 212 62.7
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.2e-67 259.6 380 39.7
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 3.3e-64 250.0 362 38.7
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.0e-56 224.2 211 55.9
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.7e-55 221.1 259 50.2
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 2.8e-55 220.3 192 56.8
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 4.2e-51 206.5 426 31.9
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 8.0e-50 202.2 345 36.8
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 6.7e-49 199.1 156 62.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.4e-46 191.4 437 32.7
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.1e-46 189.9 394 34.3
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.6e-45 188.0 434 31.8
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.7e-42 176.4 450 29.8
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 6.8e-41 172.6 432 30.8
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.5e-40 171.4 451 31.3
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 2.4e-38 164.1 462 29.7
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.5e-35 152.9 487 27.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.1e-34 151.0 436 30.3
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.0e-33 148.7 408 29.2
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.5e-27 128.3 117 53.8
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 7.5e-24 115.9 228 33.8
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-21 108.6 232 31.9
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.6e-20 102.4 231 34.6
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.5e-19 101.7 88 56.8
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 8.0e-18 95.9 284 29.9
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.4e-17 95.1 72 61.1
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-17 94.7 76 59.2
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 3.9e-12 77.0 45 77.8
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 8.6e-12 75.9 208 28.8
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 9.5e-11 72.4 63 52.4
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-10 72.0 253 28.1
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.9e-06 58.2 100 40.0


User provided reference genes

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