Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 7.6e-286 986.9 657 100.0
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 7.2e-260 900.6 657 87.4
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 2.1e-198 696.4 666 67.7
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 3.8e-152 542.7 695 50.4
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 6.5e-152 542.0 670 58.5
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 1.6e-150 537.3 688 51.9
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.5e-148 530.8 664 59.3
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 1.3e-147 527.7 669 58.7
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 2.4e-146 523.5 711 51.1
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.7e-144 517.3 707 48.9
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 6.1e-142 508.8 712 50.3
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.8e-141 507.3 595 51.4
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 5.2e-141 505.8 708 53.7
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.5e-140 504.2 704 54.0
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 3.3e-140 503.1 671 52.0
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 9.1e-138 495.0 698 51.3
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 2.0e-137 493.8 684 50.3
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 2.0e-137 493.8 599 51.3
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.5e-135 486.9 664 51.5
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 3.2e-135 486.5 670 48.7
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.6e-134 484.2 667 50.1
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 4.7e-134 482.6 707 48.9
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 6.1e-134 482.3 698 46.7
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.4e-133 481.1 671 52.0
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 6.3e-131 472.2 670 47.5
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 7.0e-130 468.8 666 46.2
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.5e-127 461.1 671 47.8
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.2e-126 458.0 665 46.6
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 2.7e-126 456.8 634 49.7
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 4.7e-126 456.1 670 51.6
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.4e-124 449.9 674 48.1
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 6.3e-123 445.7 669 51.1
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 6.3e-123 445.7 690 44.5
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.1e-122 444.9 677 47.6
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 3.8e-120 436.4 683 43.9
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.1e-118 430.6 666 48.8
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.8e-117 427.6 691 46.5
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 1.8e-117 427.6 731 46.0
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.3e-117 427.2 667 51.4
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 3.0e-117 426.8 686 51.6
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 8.9e-117 425.2 655 45.8
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.5e-116 424.5 696 47.1
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.0e-116 424.1 694 49.4
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 1.3e-115 421.4 672 50.4
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.8e-115 420.2 682 44.3
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 5.0e-112 409.5 679 46.5
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-111 408.3 663 50.8
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 9.5e-111 405.2 667 44.8
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 2.8e-110 403.7 669 46.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 6.1e-110 402.5 668 43.4
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 6.1e-110 402.5 705 46.7
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.0e-109 400.2 636 47.6
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 3.0e-109 400.2 715 44.9
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.4e-108 396.7 666 47.6
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.4e-108 396.4 710 46.5
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.7e-107 394.4 666 46.4
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 2.9e-107 393.7 659 41.7
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 8.3e-107 392.1 681 42.3
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 8.3e-107 392.1 716 43.7
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.2e-106 390.2 709 44.7
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 5.4e-106 389.4 682 43.8
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.6e-105 387.9 716 45.3
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 6.6e-104 382.5 678 42.3
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 2.5e-103 380.6 668 46.4
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 7.3e-103 379.0 592 49.3
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.1e-102 377.5 545 47.0
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 2.1e-102 377.5 675 41.8
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 6.2e-102 375.9 668 46.6
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.2e-100 371.7 670 44.5
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.4e-99 365.9 580 48.6
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.4e-98 364.8 664 48.6
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.2e-97 361.7 580 46.9
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.6e-97 361.3 700 43.3
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 4.6e-97 359.8 607 45.6
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 4.7e-94 349.7 656 41.9
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 1.2e-89 335.1 662 42.4
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.6e-89 334.7 650 46.5
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.6e-89 333.2 595 46.1
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 2.3e-88 330.9 685 42.8
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.6e-88 329.3 658 44.5
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 5.2e-85 319.7 545 45.7
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 1.5e-84 318.2 534 46.6
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.2e-81 308.5 661 40.7
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 3.5e-81 307.0 592 41.6
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.5e-79 301.6 673 36.7
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 1.6e-78 298.1 559 44.2
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.4e-74 284.3 680 43.1
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.3e-72 278.5 682 41.9
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.5e-71 275.0 679 39.6
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 8.1e-70 269.2 671 37.3
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.4e-69 267.7 646 43.0
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 3.1e-69 267.3 595 42.4
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.2e-68 265.4 357 48.5
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.5e-68 265.0 458 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.0e-68 264.6 677 33.8
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 3.5e-65 253.8 440 43.4
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.8e-64 251.5 719 35.5
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.1e-63 248.8 455 38.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 3.3e-63 247.3 657 40.2
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 3.3e-63 247.3 673 40.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 4.3e-63 246.9 657 40.2
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 9.6e-63 245.7 589 38.9
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.3e-62 245.4 653 38.3
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 2.1e-62 244.6 660 39.4
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.7e-62 243.8 660 39.4
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 5.3e-61 240.0 680 33.8
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 6.9e-61 239.6 675 32.0
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.5e-60 238.4 443 38.8
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 1.6e-57 228.4 260 54.2
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.1e-57 228.0 675 30.8
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.4e-53 214.5 449 37.2
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.6e-44 184.5 353 40.2
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 5.7e-39 166.8 363 43.8
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 2.2e-38 164.9 186 50.5
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 4.8e-38 163.7 337 41.5
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 5.0e-35 153.7 235 48.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.9e-34 151.8 564 31.6
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.5e-31 142.1 192 59.9
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 9.7e-31 139.4 601 32.3
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 2.7e-25 121.3 621 27.5
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 3.0e-24 117.9 330 35.2
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 2.0e-23 115.2 642 27.9
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.8e-22 111.3 169 44.4
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 6.3e-22 110.2 112 49.1
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 5.3e-21 107.1 125 55.2
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.6e-20 105.5 125 55.2
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 4.5e-20 104.0 160 43.8
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.2e-18 96.7 127 56.7
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 6.1e-17 93.6 140 45.0
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 2.3e-16 91.7 168 42.9
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.1e-13 82.8 628 26.4
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 4.1e-13 80.9 585 25.5
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.7e-12 78.2 555 25.8


User provided reference genes

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