Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04576 Corylus avellana HOM05D001380 ORTHO05D001912 1.9e-37 158.7 82 100.0
Cfa006242 Carpinus fangiana HOM05D001380 ORTHO05D001912 6.9e-27 123.6 63 98.4
CiPaw.08G114100 Carya illinoinensis HOM05D001380 ORTHO05D001912 6.7e-22 107.1 63 84.1
CiPaw.07G082300 Carya illinoinensis HOM05D001380 ORTHO05D001912 3.3e-21 104.8 65 84.6
CANSAT54G0828 Cannabis sativa HOM05D001380 ORTHO05D001912 1.1e-19 99.8 65 80.0
CiPaw.16G059500 Carya illinoinensis HOM05D001380 ORTHO05D001912 5.3e-19 97.4 65 80.0
ClCG03G011640 Citrullus lanatus HOM05D001380 ORTHO05D001912 3.4e-18 94.7 74 68.9
MD04G1247100 Malus domestica HOM05D001380 ORTHO05D001912 5.8e-18 94.0 68 75.0
Prupe.6G363300 Prunus persica HOM05D001380 ORTHO05D001912 2.9e-17 91.7 68 75.0
TWI18G0974 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 6.5e-17 90.5 70 71.4
Manes.12G003400 Manihot esculenta HOM05D001380 ORTHO05D001912 8.4e-17 90.1 67 74.6
Sed0021535 Sechium edule HOM05D001380 ORTHO05D001912 1.1e-16 89.7 74 67.6
COL.COLO4_04126 Corchorus olitorius HOM05D001380 ORTHO05D001912 1.4e-16 89.4 66 72.7
Atru.chr12.1721 Acer truncatum HOM05D001380 ORTHO05D001912 2.5e-16 88.6 71 64.8
MD12G1263100 Malus domestica HOM05D001380 ORTHO05D001912 3.2e-16 88.2 68 70.6
Duzib128G0783 Durio zibethinus HOM05D001380 ORTHO05D001912 5.5e-16 87.4 77 62.3
Duzib177G0090 Durio zibethinus HOM05D001380 ORTHO05D001912 7.1e-16 87.0 69 69.6
Potri.019G055300 Populus trichocarpa HOM05D001380 ORTHO05D001912 7.1e-16 87.0 69 72.5
TWI36G0161 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 7.1e-16 87.0 72 65.3
TWI36G0975 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 7.1e-16 87.0 72 65.3
Dinv21371 Davidia involucrata HOM05D001380 ORTHO05D001912 9.3e-16 86.7 64 70.3
Sabra13G0078700 Salix brachista HOM05D001380 ORTHO05D001912 9.3e-16 86.7 79 62.0
GSVIVG01019059001 Vitis vinifera HOM05D001380 ORTHO05D001912 9.3e-16 86.7 65 70.8
TAR365G0103 Trochodendron aralioides HOM05D001380 ORTHO05D001912 1.2e-15 86.3 70 71.4
Dinv29082 Davidia involucrata HOM05D001380 ORTHO05D001912 1.6e-15 85.9 67 67.2
Thecc.05G185900 Theobroma cacao HOM05D001380 ORTHO05D001912 1.6e-15 85.9 69 68.1
FAN05G2695 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.7e-15 85.1 65 73.8
vmacro19573 Vaccinium macrocarpon HOM05D001380 ORTHO05D001912 2.7e-15 85.1 67 64.2
Duzib177G0597 Durio zibethinus HOM05D001380 ORTHO05D001912 4.6e-15 84.3 69 68.1
Manes.13G003300 Manihot esculenta HOM05D001380 ORTHO05D001912 4.6e-15 84.3 68 70.6
Sabra19G0064500 Salix brachista HOM05D001380 ORTHO05D001912 4.6e-15 84.3 68 70.6
Sed0027971 Sechium edule HOM05D001380 ORTHO05D001912 4.6e-15 84.3 74 63.5
FvH4_6g00220 Fragaria vesca HOM05D001380 ORTHO05D001912 6.0e-15 84.0 65 72.3
FAN09G1235 Fragaria x ananassa HOM05D001380 ORTHO05D001912 6.0e-15 84.0 65 72.3
Glyma.09G248500 Glycine max HOM05D001380 ORTHO05D001912 6.0e-15 84.0 63 71.4
RcHm_v2.0_Chr3g0447591 Rosa chinensis HOM05D001380 ORTHO05D001912 7.9e-15 83.6 67 71.6
FAN02G2414 Fragaria x ananassa HOM05D001380 ORTHO05D001912 1.0e-14 83.2 65 72.3
Lalb_Chr01g0020601 Lupinus albus HOM05D001380 ORTHO05D001912 1.8e-14 82.4 65 72.3
Cpa.g.c42760 Carica papaya HOM05D001380 ORTHO05D001912 2.3e-14 82.0 67 68.7
PGR119G1928 Punica granatum HOM05D001380 ORTHO05D001912 3.0e-14 81.6 67 71.6
AT1G65290 Arabidopsis thaliana HOM05D001380 ORTHO05D001912 3.9e-14 81.3 77 64.9
Rhsim05G0165600 Rhododendron simsii HOM05D001380 ORTHO05D001912 3.9e-14 81.3 68 63.2
TAR362G0024 Trochodendron aralioides HOM05D001380 ORTHO05D001912 3.9e-14 81.3 63 73.0
FAN14G3271 Fragaria x ananassa HOM05D001380 ORTHO05D001912 5.1e-14 80.9 64 70.3
Glyma.18G244300 Glycine max HOM05D001380 ORTHO05D001912 5.1e-14 80.9 63 69.8
Potri.013G084500 Populus trichocarpa HOM05D001380 ORTHO05D001912 6.7e-14 80.5 69 68.1
AUR62000288 Chenopodium quinoa HOM05D001380 ORTHO05D001912 1.5e-13 79.3 64 64.1
AUR62006636 Chenopodium quinoa HOM05D001380 ORTHO05D001912 1.5e-13 79.3 64 64.1
AL2G20410 Arabidopsis lyrata HOM05D001380 ORTHO05D001912 1.9e-13 79.0 77 62.3
THA.LOC104821933 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 2.5e-13 78.6 68 64.7
CDE07G1372 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 3.3e-13 78.2 66 65.2
Carub.0002s1097 Capsella rubella HOM05D001380 ORTHO05D001912 4.3e-13 77.8 64 68.8
CDE04G0718 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 4.3e-13 77.8 66 65.2
Phvul.008G052400 Phaseolus vulgaris HOM05D001380 ORTHO05D001912 4.3e-13 77.8 63 66.7
VMungo1383G0196 Vigna mungo HOM05D001380 ORTHO05D001912 4.3e-13 77.8 63 66.7
Ah.04g159120 Amaranthus hybridus HOM05D001380 ORTHO05D001912 5.7e-13 77.4 81 55.6
Gohir.A01G073100 Gossypium hirsutum HOM05D001380 ORTHO05D001912 5.7e-13 77.4 71 63.4
Gohir.D01G059700 Gossypium hirsutum HOM05D001380 ORTHO05D001912 5.7e-13 77.4 71 63.4
Gorai.002G080900 Gossypium raimondii HOM05D001380 ORTHO05D001912 5.7e-13 77.4 71 63.4
Sc16g0010490 Simmondsia chinensis HOM05D001380 ORTHO05D001912 5.7e-13 77.4 68 64.7
Hund07365 Selenicereus undatus HOM05D001380 ORTHO05D001912 7.4e-13 77.0 67 64.2
BcaNung05536 Brassica carinata HOM05D001380 ORTHO05D001912 9.6e-13 76.6 63 66.7
Gorai.013G111400 Gossypium raimondii HOM05D001380 ORTHO05D001912 9.6e-13 76.6 71 62.0
DCAR_006478 Daucus carota HOM05D001380 ORTHO05D001912 1.3e-12 76.3 63 65.1
HPP92_011340 Vanilla planifolia HOM05D001380 ORTHO05D001912 1.3e-12 76.3 63 63.5
CARHR056960 Cardamine hirsuta HOM05D001380 ORTHO05D001912 2.1e-12 75.5 77 61.0
Gohir.D13G105200 Gossypium hirsutum HOM05D001380 ORTHO05D001912 2.1e-12 75.5 71 60.6
HPP92_011263 Vanilla planifolia HOM05D001380 ORTHO05D001912 2.1e-12 75.5 63 63.5
Gohir.A01G073200 Gossypium hirsutum HOM05D001380 ORTHO05D001912 2.8e-12 75.1 71 60.6
A07p32770 Brassica napus HOM05D001380 ORTHO05D001912 3.7e-12 74.7 76 61.8
C06p38980 Brassica napus HOM05D001380 ORTHO05D001912 3.7e-12 74.7 76 59.2
BolC6t38990H Brassica oleracea HOM05D001380 ORTHO05D001912 3.7e-12 74.7 76 59.2
HPP92_001012 Vanilla planifolia HOM05D001380 ORTHO05D001912 3.7e-12 74.7 64 64.1
Sc06g0005000 Simmondsia chinensis HOM05D001380 ORTHO05D001912 4.8e-12 74.3 66 63.6
THA.LOC104823810 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 4.8e-12 74.3 68 63.2
Gorai.002G081000 Gossypium raimondii HOM05D001380 ORTHO05D001912 6.2e-12 73.9 70 60.0
ATR0721G027 Amborella trichopoda HOM05D001380 ORTHO05D001912 8.2e-12 73.6 63 60.3
Cc09_g03940 Coffea canephora HOM05D001380 ORTHO05D001912 8.2e-12 73.6 77 55.8
Gohir.D01G059800 Gossypium hirsutum HOM05D001380 ORTHO05D001912 8.2e-12 73.6 71 60.6
Medtr7g080390 Medicago truncatula HOM05D001380 ORTHO05D001912 8.2e-12 73.6 73 58.9
Psat3g103240 Pisum sativum HOM05D001380 ORTHO05D001912 8.2e-12 73.6 73 58.9
BraA07t30904Z Brassica rapa HOM05D001380 ORTHO05D001912 1.1e-11 73.2 76 59.2
Hma1.2p1_0831F.1_g225410 Hydrangea macrophylla HOM05D001380 ORTHO05D001912 1.1e-11 73.2 66 60.6
Hund21915 Selenicereus undatus HOM05D001380 ORTHO05D001912 1.1e-11 73.2 68 57.4
TPR.G32003 Trifolium pratense HOM05D001380 ORTHO05D001912 1.1e-11 73.2 73 58.9
BcaC03g14693 Brassica carinata HOM05D001380 ORTHO05D001912 1.4e-11 72.8 82 56.1
C02p21280 Brassica napus HOM05D001380 ORTHO05D001912 1.4e-11 72.8 82 56.1
BolC2t08269H Brassica oleracea HOM05D001380 ORTHO05D001912 1.4e-11 72.8 82 56.1
A04p10180 Brassica napus HOM05D001380 ORTHO05D001912 1.8e-11 72.4 82 57.3
Thhalv10019314m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 1.8e-11 72.4 81 56.8
Lsat_1_v5_gn_0_14661 Lactuca sativa HOM05D001380 ORTHO05D001912 1.8e-11 72.4 73 57.5
BcaB05g24105 Brassica carinata HOM05D001380 ORTHO05D001912 2.4e-11 72.0 83 56.6
Eucgr.B01464 Eucalyptus grandis HOM05D001380 ORTHO05D001912 2.4e-11 72.0 64 67.2
Peaxi162Scf40203g00005 Petunia axillaris HOM05D001380 ORTHO05D001912 2.4e-11 72.0 65 60.0
Sp5g19950 Schrenkiella parvula HOM05D001380 ORTHO05D001912 3.1e-11 71.6 81 56.8
BcaC02g09518 Brassica carinata HOM05D001380 ORTHO05D001912 4.0e-11 71.2 82 56.1
C04p43660 Brassica napus HOM05D001380 ORTHO05D001912 4.0e-11 71.2 82 56.1
BolC4t25947H Brassica oleracea HOM05D001380 ORTHO05D001912 4.0e-11 71.2 82 56.1
BraA04t16682Z Brassica rapa HOM05D001380 ORTHO05D001912 4.0e-11 71.2 82 56.1
arahy.Tifrunner.gnm1.ann1.WV5AXR Arachis hypogaea HOM05D001380 ORTHO05D001912 5.3e-11 70.9 63 60.3
Nn2g12551 Nelumbo nucifera HOM05D001380 ORTHO05D001912 5.3e-11 70.9 58 65.5
SalBow1G5265 Salvia bowleyana HOM05D001380 ORTHO05D001912 5.3e-11 70.9 63 57.1
Thhalv10009290m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 6.9e-11 70.5 73 57.5
SGA_v2.0_scaffold62G21487 Striga asiatica HOM05D001380 ORTHO05D001912 6.9e-11 70.5 66 60.6
Aqoxy2G00288 Aquilegia oxysepala HOM05D001380 ORTHO05D001912 9.0e-11 70.1 69 56.5
MSTRG.337 Avicennia marina HOM05D001380 ORTHO05D001912 9.0e-11 70.1 66 62.1
Lj1g0015224 Lotus japonicus HOM05D001380 ORTHO05D001912 9.0e-11 70.1 64 60.9
EL10Ac4g10007 Beta vulgaris HOM05D001380 ORTHO05D001912 1.2e-10 69.7 69 60.9
Migut.F01858 Erythranthe guttata HOM05D001380 ORTHO05D001912 1.2e-10 69.7 66 60.6
BcaB06g27022 Brassica carinata HOM05D001380 ORTHO05D001912 1.5e-10 69.3 69 60.9
Ca_08005_v3 Cicer arietinum L. HOM05D001380 ORTHO05D001912 1.5e-10 69.3 65 61.5
Lalb_Chr03g0038091 Lupinus albus HOM05D001380 ORTHO05D001912 1.5e-10 69.3 66 60.6
Nitab4.5_0000080g0310 Nicotiana tabacum HOM05D001380 ORTHO05D001912 1.5e-10 69.3 66 60.6
PSO339G5679 Papaver somniferum HOM05D001380 ORTHO05D001912 1.5e-10 69.3 65 61.5
PSO384G3260 Papaver somniferum HOM05D001380 ORTHO05D001912 1.5e-10 69.3 65 61.5
Peaxi162Scf01286g00120 Petunia axillaris HOM05D001380 ORTHO05D001912 1.5e-10 69.3 65 64.6
QL01p048084 Quercus lobata HOM05D001380 ORTHO05D001912 1.5e-10 69.3 50 78.0
Sp7g05890 Schrenkiella parvula HOM05D001380 ORTHO05D001912 1.5e-10 69.3 81 55.6
Aa31LG2G2400 Aethionema arabicum HOM05D001380 ORTHO05D001912 2.0e-10 68.9 76 53.9
A02p13160 Brassica napus HOM05D001380 ORTHO05D001912 2.0e-10 68.9 84 56.0
BraA02t06372Z Brassica rapa HOM05D001380 ORTHO05D001912 2.0e-10 68.9 84 56.0
Nitab4.5_0001449g0060 Nicotiana tabacum HOM05D001380 ORTHO05D001912 2.0e-10 68.9 66 59.1
arahy.Tifrunner.gnm1.ann1.XR6FWD Arachis hypogaea HOM05D001380 ORTHO05D001912 2.6e-10 68.6 63 58.7
Thhalv10005122m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 2.6e-10 68.6 81 54.3
MBI15_g22769_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 2.6e-10 68.6 64 60.9
Aa31LG9G17830 Aethionema arabicum HOM05D001380 ORTHO05D001912 3.4e-10 68.2 81 55.6
Ah.06g195350 Amaranthus hybridus HOM05D001380 ORTHO05D001912 5.8e-10 67.4 81 51.9
Migut.F02101 Erythranthe guttata HOM05D001380 ORTHO05D001912 5.8e-10 67.4 64 56.2
ECA232G2842 Erigeron canadensis HOM05D001380 ORTHO05D001912 7.6e-10 67.0 74 54.1
HanXRQChr16g0511851 Helianthus annuus HOM05D001380 ORTHO05D001912 7.6e-10 67.0 78 53.8
MBI14_g24978_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 7.6e-10 67.0 70 58.6
MSTRG.8202 Avicennia marina HOM05D001380 ORTHO05D001912 1.3e-09 66.2 63 57.1
SGA_v2.0_scaffold13G06355 Striga asiatica HOM05D001380 ORTHO05D001912 1.7e-09 65.9 66 56.1
AL7G45250 Arabidopsis lyrata HOM05D001380 ORTHO05D001912 2.2e-09 65.5 82 53.7
Solyc04g015370.3 Solanum lycopersicum HOM05D001380 ORTHO05D001912 2.2e-09 65.5 65 60.0
Sopen04g007440 Solanum pennellii HOM05D001380 ORTHO05D001912 2.2e-09 65.5 65 60.0
PGSC0003DMG400027265 Solanum tuberosum HOM05D001380 ORTHO05D001912 2.9e-09 65.1 65 60.0
Nitab4.5_0001663g0170 Nicotiana tabacum HOM05D001380 ORTHO05D001912 6.5e-09 63.9 64 60.9
SalBow6G4401 Salvia bowleyana HOM05D001380 ORTHO05D001912 6.5e-09 63.9 66 57.6
Oeu009726.2 Olea europaea HOM05D001380 ORTHO05D001912 1.1e-08 63.2 67 55.2
MSTRG.27405 Avicennia marina HOM05D001380 ORTHO05D001912 1.9e-08 62.4 64 57.8
Nitab4.5_0000582g0090 Nicotiana tabacum HOM05D001380 ORTHO05D001912 1.9e-08 62.4 43 72.1
Nitab4.5_0004719g0080 Nicotiana tabacum HOM05D001380 ORTHO05D001912 1.9e-08 62.4 43 72.1
PGSC0003DMG400023456 Solanum tuberosum HOM05D001380 ORTHO05D001912 4.2e-08 61.2 42 73.8
Ciclev10013736m.g Citrus clementina HOM05D001380 ORTHO05D001912 5.5e-08 60.8 32 93.8
Solyc05g056240.3 Solanum lycopersicum HOM05D001380 ORTHO05D001912 5.5e-08 60.8 42 73.8
PGSC0003DMG400024963 Solanum tuberosum HOM05D001380 ORTHO05D001912 5.5e-08 60.8 42 71.4
Sopen05g034630 Solanum pennellii HOM05D001380 ORTHO05D001912 7.1e-08 60.5 42 73.8
Os05g0377000 Oryza sativa ssp. japonica HOM05D001380 ORTHO05D001912 1.2e-07 59.7 63 50.8
unitig_26.g9575 Utricularia gibba HOM05D001380 ORTHO05D001912 1.2e-07 59.7 71 49.3
TAR636G0389 Trochodendron aralioides HOM05D001380 ORTHO05D001912 1.6e-07 59.3 64 54.7
TAR636G0328 Trochodendron aralioides HOM05D001380 ORTHO05D001912 2.1e-07 58.9 65 52.3
TAR636G2350 Trochodendron aralioides HOM05D001380 ORTHO05D001912 2.7e-07 58.5 64 53.1
Gohir.A13G078866 Gossypium hirsutum HOM05D001380 ORTHO05D001912 7.9e-07 57.0 30 90.0
Os03g0352800 Oryza sativa ssp. japonica HOM05D001380 ORTHO05D001912 1.3e-06 56.2 71 46.5
Zm00001eb286820 Zea mays HOM05D001380 ORTHO05D001912 1.3e-06 56.2 65 53.8


User provided reference genes

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