Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 9.2e-145 516.9 270 100.0
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 2.6e-115 419.1 216 97.2
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 4.4e-115 418.3 265 82.3
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 8.4e-114 414.1 263 81.4
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 1.3e-101 373.6 274 73.4
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 1.4e-100 370.2 268 73.9
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.4e-99 365.5 267 74.2
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 3.4e-99 365.5 267 75.3
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 1.0e-98 364.0 268 71.3
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 2.9e-98 362.5 267 70.4
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 8.4e-98 360.9 267 74.2
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 3.2e-97 359.0 271 73.1
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 9.3e-97 357.5 266 70.7
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 4.6e-96 355.1 236 76.7
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 7.9e-96 354.4 243 75.7
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 1.8e-95 353.2 292 69.2
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 8.7e-95 350.9 273 68.5
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 8.7e-95 350.9 221 79.2
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 1.1e-94 350.5 260 71.9
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 3.3e-94 349.0 274 70.8
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 4.3e-94 348.6 227 74.4
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 6.2e-93 344.7 268 70.5
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.4e-92 343.6 264 69.3
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 1.8e-92 343.2 270 68.1
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 6.9e-92 341.3 275 66.9
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 3.4e-91 339.0 271 68.6
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 4.5e-91 338.6 261 68.6
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 4.5e-91 338.6 261 70.1
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 4.5e-91 338.6 269 67.7
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 5.8e-91 338.2 255 69.0
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 1.0e-90 337.4 261 69.3
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 1.7e-90 336.7 215 76.7
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.8e-90 335.5 238 71.0
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 8.4e-90 334.3 238 70.6
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 2.5e-89 332.8 221 73.8
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 7.1e-89 331.3 197 80.7
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 7.1e-89 331.3 266 66.2
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 7.1e-89 331.3 232 71.6
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 7.1e-89 331.3 238 70.6
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 7.1e-89 331.3 223 73.1
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 1.2e-88 330.5 218 76.1
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.7e-88 329.3 238 70.2
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.7e-88 329.3 238 70.2
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 4.6e-88 328.6 258 68.6
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 4.6e-88 328.6 241 68.9
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 7.9e-88 327.8 261 65.5
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 1.0e-87 327.4 266 69.5
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 1.8e-87 326.6 261 66.7
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 5.1e-87 325.1 224 69.2
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 6.7e-87 324.7 226 71.2
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.1e-86 323.9 250 66.4
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 1.1e-86 323.9 228 70.2
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 1.9e-86 323.2 227 70.0
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.9e-86 323.2 218 72.9
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 2.5e-86 322.8 274 62.4
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 4.3e-86 322.0 222 73.0
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 7.4e-86 321.2 223 71.7
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 9.7e-86 320.9 243 67.5
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 2.2e-85 319.7 228 69.7
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 2.8e-85 319.3 242 66.9
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 2.8e-85 319.3 261 66.7
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 4.8e-85 318.5 265 64.9
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 4.8e-85 318.5 267 65.9
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 4.8e-85 318.5 218 72.0
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 1.1e-84 317.4 216 71.3
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 1.4e-84 317.0 228 69.7
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 2.4e-84 316.2 259 63.3
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 4.1e-84 315.5 219 72.1
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 1.2e-83 313.9 256 65.2
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.5e-83 313.5 193 79.3
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 1.5e-83 313.5 260 62.3
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 3.4e-83 312.4 232 68.1
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 4.5e-83 312.0 226 68.1
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 3.8e-82 308.9 280 63.6
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 3.8e-82 308.9 249 63.5
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 3.8e-82 308.9 229 67.7
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 6.5e-82 308.1 214 71.0
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 6.5e-82 308.1 188 79.3
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 1.1e-81 307.4 200 75.0
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 1.4e-81 307.0 260 62.3
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 1.4e-81 307.0 290 58.6
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 9.4e-81 304.3 227 67.4
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 4.6e-80 302.0 269 61.3
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 7.9e-80 301.2 235 64.7
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 1.0e-79 300.8 249 62.7
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 3.9e-79 298.9 262 62.2
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 1.1e-78 297.4 246 63.0
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 2.0e-78 296.6 262 61.8
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 2.0e-78 296.6 230 66.1
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 2.5e-78 296.2 264 60.6
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 2.5e-78 296.2 264 60.6
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 1.1e-76 290.8 220 66.8
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 1.8e-76 290.0 211 70.1
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 9.1e-76 287.7 260 60.4
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 9.1e-76 287.7 258 60.9
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 2.2e-74 283.1 265 58.1
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 4.2e-73 278.9 276 59.1
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.3e-69 267.3 264 58.0
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 2.6e-67 259.6 244 59.0
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 5.9e-67 258.5 266 54.9
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 2.8e-61 239.6 200 55.0
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 8.2e-61 238.0 207 57.5
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 1.4e-60 237.3 201 57.2
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.2e-59 234.2 178 67.4
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 6.5e-58 228.4 227 50.2
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 1.8e-55 220.3 187 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 6.3e-53 211.8 237 50.2
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 7.2e-49 198.4 205 50.7
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 5.6e-41 172.2 109 76.1
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 2.1e-40 170.2 157 54.8
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.8e-23 114.0 147 47.6
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 1.0e-18 98.2 190 33.7
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 6.8e-15 85.5 62 66.1
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 6.8e-15 85.5 62 66.1
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 8.9e-15 85.1 242 30.2
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.7e-10 70.9 41 78.0


User provided reference genes

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