Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 7.5e-71 270.4 136 100.0
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 7.9e-44 180.6 112 80.4
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 5.1e-43 177.9 110 80.0
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 7.4e-42 174.1 112 78.6
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 6.9e-40 167.5 112 75.0
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 6.9e-40 167.5 114 74.6
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.5e-39 166.4 117 76.1
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 2.2e-38 162.5 112 72.3
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 4.9e-38 161.4 113 74.3
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.9e-37 159.5 107 72.9
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 2.4e-37 159.1 120 69.2
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 9.3e-37 157.1 112 71.4
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 4.6e-36 154.8 103 73.8
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 1.0e-35 153.7 116 69.0
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.3e-35 153.3 112 69.6
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.8e-35 152.9 113 71.7
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 3.9e-35 151.8 107 68.2
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.7e-35 151.0 119 69.7
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 6.7e-35 151.0 112 70.5
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 6.7e-35 151.0 112 70.5
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 8.7e-35 150.6 113 68.1
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.1e-34 150.2 113 69.0
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.1e-34 150.2 113 68.1
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.5e-34 149.8 113 67.3
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.5e-34 149.8 113 69.0
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 1.5e-34 149.8 125 64.0
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 1.9e-34 149.4 117 70.1
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.9e-34 149.4 113 69.0
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 2.5e-34 149.1 112 66.1
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.3e-34 148.7 113 67.3
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.3e-34 148.3 117 70.1
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.3e-34 148.3 112 71.4
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 4.3e-34 148.3 112 67.9
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 1.3e-33 146.7 113 69.9
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 1.3e-33 146.7 112 68.8
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.6e-33 146.4 109 72.5
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 1.6e-33 146.4 107 67.3
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 2.8e-33 145.6 117 65.0
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.7e-33 145.2 117 63.2
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 4.8e-33 144.8 117 66.7
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 4.8e-33 144.8 107 67.3
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 6.2e-33 144.4 112 62.5
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 6.2e-33 144.4 112 62.5
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 6.2e-33 144.4 116 66.4
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 8.2e-33 144.1 115 64.3
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 8.2e-33 144.1 113 69.9
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.8e-32 142.9 113 69.0
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 2.4e-32 142.5 107 66.4
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 4.0e-32 141.7 103 67.0
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 4.0e-32 141.7 107 65.4
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 5.3e-32 141.4 121 61.2
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 9.0e-32 140.6 113 68.1
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 1.5e-31 139.8 109 67.0
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 2.0e-31 139.4 112 61.6
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 2.0e-31 139.4 107 64.5
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 2.0e-31 139.4 102 64.7
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 2.6e-31 139.0 108 62.0
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 4.9e-30 134.8 109 64.2
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 6.5e-30 134.4 113 63.7
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 6.5e-30 134.4 114 65.8
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 8.4e-30 134.0 112 64.3
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.1e-29 133.7 109 62.4
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.1e-29 133.7 112 65.2
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.4e-29 133.3 108 61.1
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.9e-29 132.9 104 65.4
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 2.5e-29 132.5 111 62.2
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 2.5e-29 132.5 112 60.7
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 9.3e-29 130.6 75 81.3
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.6e-28 129.8 102 63.7
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 1.6e-28 129.8 106 62.3
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.6e-28 129.8 104 65.4
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 1.6e-28 129.8 117 58.1
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 2.7e-28 129.0 102 61.8
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 2.7e-28 129.0 109 59.6
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 2.7e-28 129.0 87 71.3
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 6.0e-28 127.9 118 60.2
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 6.0e-28 127.9 111 61.3
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 7.9e-28 127.5 102 60.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 7.9e-28 127.5 102 60.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 7.9e-28 127.5 102 60.8
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 7.9e-28 127.5 85 71.8
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.0e-27 127.1 103 60.2
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 1.0e-27 127.1 58 94.8
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 1.3e-27 126.7 102 59.8
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.3e-27 126.7 103 60.2
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.3e-27 126.7 112 62.5
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.3e-27 126.7 108 62.0
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 1.8e-27 126.3 102 59.8
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 1.8e-27 126.3 59 91.5
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 2.3e-27 125.9 108 57.4
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 3.9e-27 125.2 117 64.1
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 5.1e-27 124.8 111 59.5
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 5.1e-27 124.8 112 58.0
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 1.1e-26 123.6 121 58.7
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.9e-26 122.9 108 61.1
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 1.9e-26 122.9 78 71.8
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 1.9e-26 122.9 78 71.8
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 1.9e-26 122.9 78 71.8
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 1.9e-26 122.9 78 71.8
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 1.9e-26 122.9 101 63.4
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 1.9e-26 122.9 114 60.5
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.3e-26 122.1 72 81.9
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.6e-25 119.8 53 94.3
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 2.8e-25 119.0 67 77.6
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 1.1e-24 117.1 110 57.3
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 2.4e-24 115.9 113 54.9
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 3.1e-24 115.5 110 56.4
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 6.9e-24 114.4 111 55.9
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 9.0e-24 114.0 105 52.4
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.2e-23 113.6 108 57.4
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 1.5e-23 113.2 111 56.8
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 3.4e-23 112.1 58 84.5
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 6.5e-22 107.8 113 54.9
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 8.5e-22 107.5 116 50.0
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 3.0e-19 99.0 81 58.0
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 3.0e-19 99.0 43 93.0
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.9e-19 98.6 50 78.0
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 3.9e-19 98.6 108 48.1
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 3.9e-19 98.6 50 76.0
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 7.4e-18 94.4 109 52.3
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 6.3e-17 91.3 78 56.4
Prupe.1G131400 Prunus persica HOM05D003440 ORTHO05D003953 3.8e-14 82.0 58 69.0
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 4.7e-12 75.1 58 51.7
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 7.9e-12 74.3 56 53.6
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.0e-11 72.4 97 39.2
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.0e-11 72.4 97 39.2
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 3.0e-11 72.4 97 39.2
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 5.1e-11 71.6 85 41.2
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 6.7e-11 71.2 74 41.9
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.5e-10 70.1 51 54.9
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.6e-10 69.3 81 39.5
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 2.6e-10 69.3 51 54.9
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 3.3e-10 68.9 109 34.9
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 4.4e-10 68.6 56 50.0
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 7.4e-10 67.8 102 38.2
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 7.4e-10 67.8 57 49.1
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 7.4e-10 67.8 52 50.0
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 7.4e-10 67.8 122 37.7
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.3e-09 67.0 52 51.9
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 1.3e-09 67.0 114 35.1
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.3e-09 67.0 81 40.7
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 1.3e-09 67.0 106 32.1
Pp3c13_1650 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.7e-09 66.6 82 41.5
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.2e-09 66.2 47 55.3
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.2e-09 66.2 103 35.9
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.8e-09 65.9 53 50.9
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.8e-09 65.9 103 35.0
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 2.8e-09 65.9 105 35.2
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.8e-09 65.9 114 35.1
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 3.7e-09 65.5 99 42.4
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 3.7e-09 65.5 53 47.2
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 3.7e-09 65.5 94 35.1
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 4.8e-09 65.1 50 50.0
Mapoly0005s0064 Marchantia polymorpha HOM05D003440 ORTHO05D003953 4.8e-09 65.1 52 55.8
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 4.8e-09 65.1 54 44.4
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 6.3e-09 64.7 108 32.4
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 8.2e-09 64.3 57 50.9
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.1e-08 63.9 104 37.5
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 1.1e-08 63.9 52 53.8
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 1.1e-08 63.9 52 53.8
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 1.1e-08 63.9 108 32.4
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.8e-08 63.2 54 46.3
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 4.1e-08 62.0 54 48.1
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 5.3e-08 61.6 107 33.6
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 5.3e-08 61.6 98 37.8
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 9.1e-08 60.8 106 34.9
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 2.0e-07 59.7 53 49.1
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 2.6e-07 59.3 50 50.0
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 5.9e-07 58.2 69 36.2
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.0e-06 57.4 48 47.9
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.0e-06 57.4 45 48.9
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.7e-06 56.6 50 42.0
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.7e-06 56.6 50 42.0
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 5.0e-06 55.1 50 40.0
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 6.5e-06 54.7 100 33.0
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 8.5e-06 54.3 66 39.4
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 8.5e-06 54.3 46 50.0
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 8.5e-06 54.3 68 48.5
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 8.5e-06 54.3 105 30.5


User provided reference genes

Program Settings