Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04494 Corylus avellana HOM05D001176 ORTHO05D025194 1.2e-49 199.5 102 100.0
Haze_04497 Corylus avellana HOM05D001176 ORTHO05D003317 5.5e-42 174.1 100 92.0
Cfa006301 Carpinus fangiana HOM05D001176 ORTHO05D003317 9.4e-34 146.7 100 84.0
QL01p050622 Quercus lobata HOM05D001176 ORTHO05D003317 4.7e-25 117.9 100 66.0
CiPaw.07G075100 Carya illinoinensis HOM05D001176 ORTHO05D003317 1.6e-20 102.8 103 61.2
Dinv05894 Davidia involucrata HOM05D001176 ORTHO05D003317 3.6e-17 91.7 100 56.0
Manes.09G183600 Manihot esculenta HOM05D001176 ORTHO05D003317 1.7e-14 82.8 108 50.0
Nn1g03127 Nelumbo nucifera HOM05D001176 ORTHO05D003317 2.2e-14 82.4 104 53.8
TAR362G0187 Trochodendron aralioides HOM05D001176 ORTHO05D003317 3.7e-14 81.6 102 52.9
Eucgr.H01373 Eucalyptus grandis HOM05D001176 ORTHO05D003317 1.1e-13 80.1 102 52.0
Prupe.6G358000 Prunus persica HOM05D001176 ORTHO05D003317 1.1e-13 80.1 101 56.4
TWI59G0800 Tripterygium wilfordii HOM05D001176 ORTHO05D003317 4.1e-13 78.2 99 52.5
MD04G1239800 Malus domestica HOM05D001176 ORTHO05D003317 5.4e-13 77.8 100 54.0
Nitab4.5_0009814g0010 Nicotiana tabacum HOM05D001176 ORTHO05D003317 5.4e-13 77.8 101 51.5
Psat3g105040 Pisum sativum HOM05D001176 ORTHO05D003317 5.4e-13 77.8 106 53.8
MD12G1257000 Malus domestica HOM05D001176 ORTHO05D003317 9.2e-13 77.0 55 74.5
Ca_07959_v3 Cicer arietinum L. HOM05D001176 ORTHO05D003317 1.6e-12 76.3 107 53.3
Medtr7g079440 Medicago truncatula HOM05D001176 ORTHO05D003317 1.6e-12 76.3 109 54.1
TWI14G0457 Tripterygium wilfordii HOM05D001176 ORTHO05D025194 1.6e-12 76.3 99 46.5
Lj2C52G4 Lonicera japonica HOM05D001176 ORTHO05D003317 2.0e-12 75.9 101 49.5
Hund21873 Selenicereus undatus HOM05D001176 ORTHO05D003317 2.0e-12 75.9 105 46.7
MELO3C014945.2 Cucumis melo HOM05D001176 ORTHO05D003317 2.7e-12 75.5 106 50.0
ClCG10G008080 Citrullus lanatus HOM05D001176 ORTHO05D003317 3.5e-12 75.1 105 50.5
Lalb_Chr03g0038311 Lupinus albus HOM05D001176 ORTHO05D003317 3.5e-12 75.1 120 49.2
QL11p012635 Quercus lobata HOM05D001176 ORTHO05D025194 3.5e-12 75.1 58 70.7
Sabra13G0069700 Salix brachista HOM05D001176 ORTHO05D003317 3.5e-12 75.1 100 49.0
Nn3g19881 Nelumbo nucifera HOM05D001176 ORTHO05D003317 6.0e-12 74.3 103 48.5
AUR62006725 Chenopodium quinoa HOM05D001176 ORTHO05D003317 1.3e-11 73.2 104 47.1
Sed0016129 Sechium edule HOM05D001176 ORTHO05D003317 1.7e-11 72.8 106 49.1
CSS0037928 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D003317 2.3e-11 72.4 102 48.0
Oeu010181.1 Olea europaea HOM05D001176 ORTHO05D003317 2.3e-11 72.4 101 47.5
Sopen04g022560 Solanum pennellii HOM05D001176 ORTHO05D003317 3.0e-11 72.0 100 47.0
Potri.013G088100 Populus trichocarpa HOM05D001176 ORTHO05D003317 3.9e-11 71.6 101 48.5
Solyc04g051190.3 Solanum lycopersicum HOM05D001176 ORTHO05D003317 3.9e-11 71.6 100 48.0
Ciclev10011312m.g Citrus clementina HOM05D001176 ORTHO05D003317 8.6e-11 70.5 103 48.5
Lsat_1_v5_gn_2_16321 Lactuca sativa HOM05D001176 ORTHO05D003317 8.6e-11 70.5 101 45.5
Duzib106G0985 Durio zibethinus HOM05D001176 ORTHO05D003317 1.5e-10 69.7 46 82.6
Thecc.05G203300 Theobroma cacao HOM05D001176 ORTHO05D003317 1.5e-10 69.7 84 53.6
arahy.Tifrunner.gnm1.ann1.F8T0MB Arachis hypogaea HOM05D001176 ORTHO05D003317 1.9e-10 69.3 113 47.8
AUR62000370 Chenopodium quinoa HOM05D001176 ORTHO05D003317 1.9e-10 69.3 104 46.2
CAN.G4.31 Capsicum annuum HOM05D001176 ORTHO05D003317 2.5e-10 68.9 83 50.6
Gohir.A13G154700 Gossypium hirsutum HOM05D001176 ORTHO05D003317 3.3e-10 68.6 46 80.4
Gohir.D13G159400 Gossypium hirsutum HOM05D001176 ORTHO05D003317 3.3e-10 68.6 46 80.4
Gorai.013G180200 Gossypium raimondii HOM05D001176 ORTHO05D003317 3.3e-10 68.6 46 80.4
CsaV3_3G007050 Cucumis sativus L. HOM05D001176 ORTHO05D003317 4.3e-10 68.2 104 47.1
Atru.chr12.2158 Acer truncatum HOM05D001176 ORTHO05D003317 5.6e-10 67.8 101 48.5
arahy.Tifrunner.gnm1.ann1.570P5C Arachis hypogaea HOM05D001176 ORTHO05D003317 7.3e-10 67.4 113 46.9
PGR031G1111 Punica granatum HOM05D001176 ORTHO05D003317 7.3e-10 67.4 103 45.6
Sed0016380 Sechium edule HOM05D001176 ORTHO05D003317 2.1e-09 65.9 101 49.5
Sed0023390 Sechium edule HOM05D001176 ORTHO05D003317 2.1e-09 65.9 101 49.5
Actinidia03827 Actinidia chinensis HOM05D001176 ORTHO05D003317 4.7e-09 64.7 101 47.5
Aqoxy2G03809 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 4.7e-09 64.7 77 54.5
BcaC07g37726 Brassica carinata HOM05D001176 ORTHO05D003317 6.2e-09 64.3 103 45.6
BolC8t48109H Brassica oleracea HOM05D001176 ORTHO05D003317 6.2e-09 64.3 103 45.6
Glyma.18G239900 Glycine max HOM05D001176 ORTHO05D003317 8.0e-09 63.9 109 46.8
Duzib128G0007 Durio zibethinus HOM05D001176 ORTHO05D003317 1.4e-08 63.2 46 76.1
Cc09_g03290 Coffea canephora HOM05D001176 ORTHO05D003317 1.8e-08 62.8 113 41.6
EL10Ac4g09433 Beta vulgaris HOM05D001176 ORTHO05D003317 3.1e-08 62.0 51 64.7
A08p10400 Brassica napus HOM05D001176 ORTHO05D003317 3.1e-08 62.0 103 43.7
BraA08t33039Z Brassica rapa HOM05D001176 ORTHO05D003317 3.1e-08 62.0 103 43.7
Cpa.g.sc123.12 Carica papaya HOM05D001176 ORTHO05D003317 3.1e-08 62.0 100 45.0
Oeu054597.1 Olea europaea HOM05D001176 ORTHO05D003317 3.1e-08 62.0 85 49.4
Ah.06g195830 Amaranthus hybridus HOM05D000031 ORTHO05D000030 4.0e-08 61.6 50 62.0
BcaB04g18125 Brassica carinata HOM05D001176 ORTHO05D003317 4.0e-08 61.6 63 58.7
FvH4_6g00890 Fragaria vesca HOM05D001176 ORTHO05D003317 4.0e-08 61.6 84 48.8
FAN05G5118 Fragaria x ananassa HOM05D001176 ORTHO05D003317 4.0e-08 61.6 84 48.8
FAN14G4358 Fragaria x ananassa HOM05D001176 ORTHO05D003317 4.0e-08 61.6 84 48.8
TAR365G0232 Trochodendron aralioides HOM05D001176 ORTHO05D025194 5.2e-08 61.2 46 76.1
AT1G31800 Arabidopsis thaliana HOM05D001176 ORTHO05D003317 6.8e-08 60.8 101 45.5
Rhsim05G0168700 Rhododendron simsii HOM05D001176 ORTHO05D003317 6.8e-08 60.8 51 64.7
THA.LOC104814399 Tarenaya hassleriana HOM05D001176 ORTHO05D003317 6.8e-08 60.8 50 64.0
Phvul.008G056400 Phaseolus vulgaris HOM05D001176 ORTHO05D003317 1.2e-07 60.1 109 46.8
Carub.0001s3010 Capsella rubella HOM05D001176 ORTHO05D003317 1.5e-07 59.7 47 68.1
HanXRQChr17g0559051 Helianthus annuus HOM05D001176 ORTHO05D003317 1.5e-07 59.7 97 44.3
CARHR031100 Cardamine hirsuta HOM05D001176 ORTHO05D003317 2.0e-07 59.3 52 59.6
FAN09G3806 Fragaria x ananassa HOM05D001176 ORTHO05D003317 2.0e-07 59.3 85 48.2
TPR.G29411 Trifolium pratense HOM05D001176 ORTHO05D003317 2.0e-07 59.3 115 47.0
Thhalv10007138m.g Eutrema salsugineum HOM05D001176 ORTHO05D003317 2.6e-07 58.9 101 48.5
MBI10_g09189_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D003317 2.6e-07 58.9 94 44.7
SalBow1G1247 Salvia bowleyana HOM05D001176 ORTHO05D003317 2.6e-07 58.9 59 61.0
Sp1g27490 Schrenkiella parvula HOM05D001176 ORTHO05D003317 2.6e-07 58.9 101 44.6
Sc09g0001630 Simmondsia chinensis HOM05D001176 ORTHO05D025194 2.6e-07 58.9 101 44.6
MSTRG.9229 Avicennia marina HOM05D001176 ORTHO05D003317 7.5e-07 57.4 101 44.6
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 9.8e-07 57.0 46 71.7
Migut.F02071 Erythranthe guttata HOM05D001176 ORTHO05D003317 1.3e-06 56.6 53 58.5
GSVIVG01019158001 Vitis vinifera HOM05D001176 ORTHO05D003317 1.3e-06 56.6 38 73.7
CANSAT11G0194 Cannabis sativa HOM05D001176 ORTHO05D003317 3.7e-06 55.1 100 41.0
VMungo1383G3642 Vigna mungo HOM05D001176 ORTHO05D003317 3.7e-06 55.1 108 44.4
ATR0088G045 Amborella trichopoda HOM05D001176 ORTHO05D003317 6.4e-06 54.3 75 49.3
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 8.3e-06 53.9 101 41.6


User provided reference genes

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