Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 2.0e-158 562.4 284 100.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.0e-121 439.5 282 83.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.2e-107 393.7 282 73.4
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.3e-101 372.9 282 68.8
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 8.3e-96 354.4 284 66.5
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.1e-95 354.0 284 66.5
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.1e-95 354.0 284 66.2
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 5.9e-94 348.2 285 66.0
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 6.6e-93 344.7 282 64.2
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 4.3e-92 342.0 282 62.1
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 5.6e-92 341.7 284 65.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.6e-91 339.0 284 64.4
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 5.2e-90 335.1 284 62.7
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.6e-89 332.8 284 63.4
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 3.4e-89 332.4 284 63.4
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 3.4e-89 332.4 283 61.5
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.4e-89 332.4 287 62.7
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.8e-89 331.6 282 61.0
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 7.5e-89 331.3 284 61.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.7e-88 330.1 282 59.9
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 3.7e-88 328.9 285 63.5
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.1e-87 327.4 285 61.4
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.9e-87 326.6 284 60.9
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 3.2e-87 325.9 285 61.8
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 4.1e-87 325.5 285 61.8
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 5.4e-87 325.1 286 61.9
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 7.0e-87 324.7 285 61.1
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 7.0e-87 324.7 284 61.6
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.2e-86 323.9 282 61.7
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.6e-86 323.6 285 60.7
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.7e-86 322.8 284 61.3
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.7e-86 322.8 282 59.2
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 7.8e-86 321.2 286 60.5
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.1e-84 317.4 285 61.8
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.1e-84 317.4 284 59.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.9e-84 316.6 284 61.3
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.3e-84 315.8 284 61.6
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.3e-84 314.7 285 61.1
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.1e-83 313.2 282 57.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.6e-83 312.4 284 60.9
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.1e-83 311.2 284 60.9
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.4e-82 310.5 289 58.1
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.0e-81 306.6 293 56.7
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.0e-81 306.6 284 59.2
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.8e-81 305.1 284 60.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 9.8e-81 304.3 253 64.4
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.2e-80 303.1 295 57.6
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.9e-80 302.8 284 60.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.9e-80 302.0 260 61.9
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 6.4e-80 301.6 289 58.5
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 8.3e-80 301.2 289 58.8
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.1e-79 300.8 284 55.3
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-79 300.8 283 56.2
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.9e-79 300.1 292 56.8
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 2.4e-79 299.7 284 58.1
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 3.2e-79 299.3 289 58.8
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.7e-78 296.2 282 57.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 6.0e-78 295.0 282 56.0
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.0e-77 294.3 286 58.4
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.0e-77 294.3 282 56.0
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.3e-77 293.9 283 55.8
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.3e-77 293.9 284 57.7
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.1e-76 290.8 289 56.1
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.5e-76 290.4 286 55.9
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.3e-76 289.3 276 58.0
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 3.3e-76 289.3 296 55.1
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 7.3e-76 288.1 241 62.2
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 1.6e-75 287.0 280 57.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.6e-75 285.8 240 62.5
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.6e-75 285.8 290 56.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.8e-74 283.5 286 55.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.8e-74 283.5 278 57.2
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 3.1e-74 282.7 287 56.8
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 4.0e-74 282.3 274 57.3
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 5.2e-74 282.0 282 56.0
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 6.8e-74 281.6 241 60.2
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.5e-73 280.4 283 55.1
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.5e-73 280.4 287 55.7
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.5e-73 280.4 240 60.0
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.0e-73 280.0 283 54.4
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 2.0e-73 280.0 284 53.9
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.6e-73 279.6 284 53.2
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.6e-73 279.6 235 61.3
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 3.4e-73 279.3 284 53.9
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 3.4e-73 279.3 240 59.6
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 9.9e-73 277.7 284 53.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 3.7e-72 275.8 284 52.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 3.7e-72 275.8 284 52.8
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.9e-71 273.5 251 57.0
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 5.4e-71 271.9 288 53.1
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 5.4e-71 271.9 290 53.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 2.7e-70 269.6 287 53.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 3.5e-70 269.2 282 52.5
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 7.8e-70 268.1 240 59.2
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 3.0e-69 266.2 241 60.6
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 6.6e-69 265.0 287 53.7
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 8.6e-69 264.6 258 56.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 6.8e-66 255.0 215 60.0
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 6.6e-61 238.4 257 47.5
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.6e-59 233.8 285 50.5
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 9.0e-58 228.0 138 79.0
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 9.3e-55 218.0 228 48.2
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.0e-53 214.5 130 78.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 5.1e-53 212.2 219 49.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.6e-53 211.8 282 46.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 7.4e-52 208.4 284 41.9
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 2.1e-51 206.8 311 42.8
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 4.8e-51 205.7 228 47.4
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 4.0e-50 202.6 210 54.8
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.3e-48 197.6 219 47.9
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 2.2e-48 196.8 266 42.5
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.4e-47 193.4 113 82.3
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 6.0e-46 188.7 221 43.4
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.4e-42 176.8 246 39.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 2.5e-39 166.8 256 39.1
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 9.0e-34 148.3 166 55.4
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-33 147.1 229 42.4
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.2e-30 137.9 85 77.6
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 3.6e-30 136.3 221 35.3
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 6.7e-29 132.1 74 85.1
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 7.4e-28 128.6 149 45.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-27 127.9 89 65.2
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.8e-27 126.7 81 70.4
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 2.8e-27 126.7 81 69.1
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 2.4e-26 123.6 81 69.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.0e-25 120.6 230 35.2
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.2e-24 117.1 82 68.3
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.2e-24 117.1 114 60.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.5e-24 115.2 105 62.9
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.1e-23 114.8 105 61.9
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-23 114.4 105 62.9
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.2e-23 112.8 105 61.9
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 8.2e-19 98.6 105 51.4
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.6e-14 83.2 87 49.4
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 6.1e-14 82.4 51 76.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 6.1e-14 82.4 50 80.0
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 7.9e-14 82.0 89 49.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 7.4e-12 75.5 207 25.6
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.1e-10 71.6 137 32.1
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.8e-10 70.9 122 38.5


User provided reference genes

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