Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.8e-82 308.1 160 100.0
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 9.2e-60 233.8 132 94.7
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.5e-57 226.5 127 92.9
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.5e-57 226.5 127 92.9
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 5.6e-57 224.6 127 91.3
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.2e-56 223.4 127 90.6
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 2.1e-56 222.6 128 92.2
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.8e-56 222.2 127 90.6
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.6e-56 221.9 127 89.8
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 3.6e-56 221.9 127 91.3
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 4.7e-56 221.5 127 91.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 1.1e-55 220.3 128 90.6
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.4e-55 219.9 127 89.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.8e-55 219.5 130 87.7
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 3.1e-55 218.8 127 89.8
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 8.9e-55 217.2 127 88.2
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 8.9e-55 217.2 127 89.0
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 8.9e-55 217.2 127 87.4
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.2e-54 216.9 128 89.8
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.5e-54 216.5 127 88.2
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 2.0e-54 216.1 127 88.2
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.0e-54 216.1 126 88.9
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 2.6e-54 215.7 127 87.4
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 2.6e-54 215.7 127 88.2
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 3.4e-54 215.3 127 87.4
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.4e-54 215.3 127 87.4
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 3.4e-54 215.3 127 87.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 4.4e-54 214.9 127 86.6
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.4e-54 214.9 127 86.6
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.4e-54 214.9 128 89.1
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.8e-54 214.5 127 85.8
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.8e-54 214.5 127 85.8
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 5.8e-54 214.5 126 87.3
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 9.9e-54 213.8 128 88.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 9.9e-54 213.8 127 87.4
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.3e-53 213.4 127 87.4
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.3e-53 213.4 123 90.2
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 213.0 127 85.0
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 213.0 127 85.8
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 213.0 127 85.8
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.2e-53 212.6 127 88.2
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 2.2e-53 212.6 127 85.8
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 2.2e-53 212.6 127 86.6
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 2.9e-53 212.2 126 88.1
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.7e-53 211.8 127 85.8
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 3.7e-53 211.8 129 86.0
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.4e-53 211.1 129 86.0
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 6.4e-53 211.1 127 86.6
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.4e-53 211.1 127 86.6
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 1.1e-52 210.3 125 86.4
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.4e-52 209.9 128 85.9
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.4e-52 209.1 131 85.5
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.4e-52 209.1 127 85.8
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 3.2e-52 208.8 127 85.8
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 5.4e-52 208.0 129 86.0
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 9.2e-52 207.2 127 85.0
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 1.2e-51 206.8 125 84.0
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.2e-51 206.8 129 83.7
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 1.2e-51 206.8 129 84.5
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.7e-51 205.7 127 83.5
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 4.6e-51 204.9 127 80.3
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 6.0e-51 204.5 125 82.4
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.0e-50 203.8 124 85.5
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.3e-50 203.4 127 80.3
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.3e-50 203.4 127 81.9
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 2.3e-50 202.6 129 82.2
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.0e-50 202.2 124 82.3
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 3.0e-50 202.2 128 83.6
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 3.0e-50 202.2 125 83.2
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 3.9e-50 201.8 124 83.9
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.9e-50 201.8 127 81.9
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 5.1e-50 201.4 122 86.9
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 5.1e-50 201.4 135 78.5
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 8.6e-50 200.7 129 81.4
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.1e-49 200.3 127 81.9
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 1.1e-49 200.3 125 82.4
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.5e-49 199.9 127 81.1
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 9.5e-49 197.2 127 79.5
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 9.5e-49 197.2 124 82.3
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 9.5e-49 197.2 124 81.5
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.6e-48 196.4 127 80.3
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 6.2e-48 194.5 127 79.5
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 1.8e-47 193.0 125 79.2
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 6.8e-47 191.0 127 77.2
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 1.5e-46 189.9 127 73.2
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.6e-46 189.1 127 74.0
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.3e-45 186.8 126 76.2
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.7e-45 186.4 125 76.8
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.9e-45 185.7 124 76.6
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 3.8e-45 185.3 122 77.9
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 4.9e-45 184.9 125 75.2
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 6.4e-45 184.5 125 76.0
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.1e-44 183.7 122 75.4
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.4e-44 183.3 122 74.6
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.4e-44 183.3 122 75.4
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.4e-44 183.3 122 77.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 2.4e-44 182.6 131 71.8
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 2.4e-44 182.6 131 71.8
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 4.2e-44 181.8 118 78.8
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.6e-43 179.9 122 75.4
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.1e-43 179.5 118 77.1
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 2.7e-43 179.1 127 71.7
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 3.5e-43 178.7 118 77.1
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 1.3e-42 176.8 127 75.6
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.3e-42 176.8 127 74.0
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.7e-42 176.4 122 73.8
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 3.9e-42 175.3 129 76.0
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.1e-42 174.9 127 73.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 5.1e-42 174.9 127 73.2
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 9.6e-41 170.6 129 74.4
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 9.6e-41 170.6 129 74.4
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 4.7e-40 168.3 147 61.9
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 4.0e-39 165.2 127 66.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 6.9e-39 164.5 183 55.2
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 9.9e-38 160.6 127 65.4
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 4.6e-35 151.8 127 64.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 1.7e-34 149.8 115 68.7
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.5e-33 146.7 127 61.4
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 2.5e-33 146.0 127 59.1
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 8.1e-32 141.0 87 87.4
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 1.8e-31 139.8 88 85.2
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 3.1e-31 139.0 127 58.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 9.9e-30 134.0 133 57.9
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 8.4e-29 131.0 87 78.2
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 9.6e-25 117.5 87 69.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 4.9e-21 105.1 120 46.7
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.1e-18 95.1 61 82.0
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.8e-16 89.4 121 44.6
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 9.0e-15 84.3 121 39.7
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 1.3e-13 80.5 65 66.2
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.9e-12 76.6 46 84.8
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 9.3e-12 74.3 55 70.9
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 7.4e-09 64.7 89 46.1
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.6e-08 63.5 31 93.5
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.1e-07 60.8 41 68.3


User provided reference genes

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