Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 2.7e-49 198.4 99 100.0
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 1.5e-39 166.0 89 95.5
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 3.2e-39 164.9 89 94.4
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 4.2e-39 164.5 89 93.3
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 5.5e-39 164.1 89 92.1
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 5.5e-39 164.1 89 94.4
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.2e-38 162.9 89 93.3
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 1.2e-38 162.9 89 93.3
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 2.1e-38 162.2 89 91.0
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.1e-38 162.2 88 92.0
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 2.8e-38 161.8 89 92.1
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.6e-38 161.4 89 91.0
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 3.6e-38 161.4 89 92.1
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 4.7e-38 161.0 89 92.1
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 4.7e-38 161.0 89 92.1
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 4.7e-38 161.0 89 92.1
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 4.7e-38 161.0 89 92.1
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 4.7e-38 161.0 89 92.1
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 6.1e-38 160.6 96 82.3
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 6.1e-38 160.6 89 91.0
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 8.0e-38 160.2 89 92.1
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 8.0e-38 160.2 89 91.0
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 1.0e-37 159.8 89 91.0
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 1.0e-37 159.8 89 91.0
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.0e-37 159.8 88 89.8
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.0e-37 159.8 88 90.9
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.8e-37 159.1 87 90.8
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.8e-37 159.1 89 89.9
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.8e-37 159.1 89 89.9
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.8e-37 159.1 89 89.9
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 1.8e-37 159.1 89 88.8
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.8e-37 159.1 89 89.9
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.8e-37 159.1 89 89.9
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 89.9
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 89.9
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 88.8
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 88.8
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 89.9
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 89.9
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 2.3e-37 158.7 89 88.8
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 3.0e-37 158.3 89 89.9
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 3.0e-37 158.3 89 89.9
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.0e-37 158.3 89 87.6
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 3.0e-37 158.3 89 91.0
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.0e-37 157.9 89 87.6
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 4.0e-37 157.9 89 88.8
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 4.0e-37 157.9 89 88.8
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 4.0e-37 157.9 89 89.9
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 5.2e-37 157.5 89 91.0
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 5.2e-37 157.5 89 91.0
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.8e-37 157.1 89 88.8
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 6.8e-37 157.1 89 88.8
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 6.8e-37 157.1 89 89.9
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 6.8e-37 157.1 89 88.8
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 8.8e-37 156.8 89 89.9
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 8.8e-37 156.8 89 88.8
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 8.8e-37 156.8 89 88.8
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 8.8e-37 156.8 89 88.8
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.2e-36 156.4 87 88.5
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 1.2e-36 156.4 89 88.8
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.2e-36 156.4 89 87.6
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 1.5e-36 156.0 89 88.8
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.5e-36 156.0 89 88.8
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.5e-36 156.0 89 88.8
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.5e-36 156.0 89 88.8
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.5e-36 156.0 89 86.5
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.5e-36 156.0 89 86.5
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.0e-36 155.6 89 86.5
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 2.0e-36 155.6 87 88.5
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 2.0e-36 155.6 89 87.6
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 2.0e-36 155.6 89 85.4
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 2.6e-36 155.2 89 86.5
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 2.6e-36 155.2 89 88.8
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 86.5
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 87.6
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 88.8
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 88.8
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 88.8
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 87.6
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 87.6
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 3.4e-36 154.8 89 87.6
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 4.4e-36 154.5 89 86.5
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.7e-36 154.1 89 87.6
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 5.7e-36 154.1 89 86.5
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 7.5e-36 153.7 89 86.5
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 7.5e-36 153.7 89 86.5
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 7.5e-36 153.7 89 85.4
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 9.8e-36 153.3 89 86.5
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 9.8e-36 153.3 89 88.8
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 9.8e-36 153.3 89 85.4
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 9.8e-36 153.3 89 85.4
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 1.3e-35 152.9 89 86.5
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.3e-35 152.9 89 87.6
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.3e-35 152.9 89 87.6
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.3e-35 152.9 89 87.6
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 1.3e-35 152.9 89 85.4
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.7e-35 152.5 82 90.2
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.7e-35 152.5 87 87.4
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.7e-35 152.5 87 87.4
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 2.2e-35 152.1 89 85.4
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 2.2e-35 152.1 89 86.5
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 2.2e-35 152.1 89 86.5
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 2.2e-35 152.1 89 86.5
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 2.2e-35 152.1 89 87.6
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 3.7e-35 151.4 89 84.3
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 3.7e-35 151.4 89 86.5
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 4.9e-35 151.0 87 85.1
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 4.9e-35 151.0 89 86.5
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 6.3e-35 150.6 89 82.0
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 6.3e-35 150.6 87 83.9
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 1.1e-34 149.8 89 84.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.8e-34 149.1 87 82.8
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 3.1e-34 148.3 98 75.5
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 4.1e-34 147.9 84 86.9
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.1e-34 147.9 89 83.1
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 5.4e-34 147.5 89 79.8
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 1.2e-33 146.4 84 85.7
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.6e-33 146.0 84 84.5
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.0e-33 145.6 81 87.7
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 2.0e-33 145.6 88 81.8
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.7e-33 145.2 89 82.0
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 3.5e-33 144.8 84 83.3
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 3.5e-33 144.8 84 83.3
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 3.5e-33 144.8 84 83.3
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 3.5e-33 144.8 84 82.1
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 4.5e-33 144.4 84 82.1
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 4.5e-33 144.4 84 82.1
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 4.5e-33 144.4 84 82.1
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 5.9e-33 144.1 79 87.3
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 5.9e-33 144.1 79 87.3
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.9e-33 144.1 89 80.9
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 5.0e-32 141.0 89 80.9
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 8.6e-32 140.2 79 83.5
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 7.3e-31 137.1 74 91.9
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 9.5e-31 136.7 79 82.3
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 9.5e-31 136.7 79 82.3
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 9.5e-31 136.7 79 82.3
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 3.6e-30 134.8 85 72.9
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 4.7e-30 134.4 80 83.8
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.0e-29 133.3 88 69.3
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.3e-29 132.1 90 71.1
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.8e-29 130.6 69 94.2
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.8e-29 130.6 69 94.2
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-28 129.8 79 78.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 9.8e-28 126.7 88 63.6
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 2.9e-27 125.2 87 67.8
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.4e-27 124.0 67 85.1
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 1.1e-26 123.2 87 75.9
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.1e-26 121.3 75 82.7
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 2.0e-25 119.0 113 58.4
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.3e-24 116.3 63 90.5
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.9e-23 112.5 68 79.4
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 3.3e-23 111.7 85 61.2
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 7.3e-23 110.5 86 58.1
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 3.1e-21 105.1 53 92.5
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 8.9e-21 103.6 55 94.5
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 1.5e-20 102.8 55 90.9
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 5.8e-20 100.9 52 92.3
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 7.5e-20 100.5 52 92.3
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 6.4e-19 97.4 77 55.8
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 3.5e-17 91.7 77 50.6
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.2e-11 72.4 35 88.6
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 1.4e-10 69.7 35 88.6
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 5.4e-10 67.8 48 64.6
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 2.8e-06 55.5 38 68.4


User provided reference genes

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