Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 6.7e-91 337.4 182 100.0
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 3.3e-53 212.2 182 71.4
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 5.4e-48 194.9 165 69.1
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.9e-40 169.9 182 58.8
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 1.2e-39 167.2 182 59.3
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 6.0e-39 164.9 185 57.8
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 6.0e-39 164.9 186 59.7
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 1.7e-38 163.3 183 60.1
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 3.0e-38 162.5 186 59.1
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 2.5e-37 159.5 185 57.8
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 9.5e-37 157.5 190 56.8
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 3.1e-35 152.5 182 56.0
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 3.1e-35 152.5 182 56.0
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 3.1e-35 152.5 182 56.0
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 3.1e-35 152.5 182 56.0
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 5.2e-35 151.8 185 53.0
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.2e-34 150.6 182 56.6
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 1.5e-34 150.2 183 56.3
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 7.6e-34 147.9 182 54.4
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 9.9e-34 147.5 186 54.8
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 9.9e-34 147.5 120 71.7
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 1.7e-33 146.7 115 74.8
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 4.9e-33 145.2 186 53.8
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 2.4e-32 142.9 263 45.6
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 3.2e-32 142.5 184 54.3
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 4.1e-32 142.1 180 53.9
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 5.4e-32 141.7 188 55.9
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 5.4e-32 141.7 186 54.3
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 7.1e-32 141.4 190 53.7
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 2.7e-31 139.4 182 51.1
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 2.7e-31 139.4 183 52.5
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 6.0e-31 138.3 176 54.0
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 1.0e-30 137.5 204 50.0
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.0e-30 137.5 174 53.4
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 1.7e-30 136.7 113 76.1
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 2.3e-30 136.3 178 52.8
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 6.6e-30 134.8 170 54.7
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 6.6e-30 134.8 178 53.4
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.9e-29 133.3 163 54.6
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 2.5e-29 132.9 185 53.5
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 3.3e-29 132.5 189 52.9
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 5.6e-29 131.7 116 69.8
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 5.6e-29 131.7 185 52.4
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.1e-28 129.8 182 47.8
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 2.8e-28 129.4 168 53.6
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.8e-28 129.4 178 52.8
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.1e-27 127.5 114 65.8
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 1.8e-27 126.7 176 52.3
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.4e-27 126.3 190 52.6
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 2.4e-27 126.3 171 51.5
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 6.9e-27 124.8 174 50.6
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 1.2e-26 124.0 174 50.6
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 1.2e-26 124.0 131 57.3
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 1.2e-26 124.0 118 63.6
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 1.5e-26 123.6 180 48.9
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 4.4e-26 122.1 158 53.2
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 5.8e-26 121.7 169 52.1
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 7.6e-26 121.3 182 50.0
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 1.3e-25 120.6 179 51.4
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 1.3e-25 120.6 119 61.3
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 1.7e-25 120.2 178 47.8
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 2.2e-25 119.8 178 49.4
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 3.8e-25 119.0 179 50.3
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 4.9e-25 118.6 179 49.2
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 4.9e-25 118.6 167 50.3
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 6.4e-25 118.2 168 48.8
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 6.4e-25 118.2 185 49.2
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 6.4e-25 118.2 180 50.0
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 8.4e-25 117.9 178 47.2
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.1e-24 117.5 180 46.1
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.1e-24 117.5 183 45.4
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 1.1e-24 117.5 175 50.3
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 1.4e-24 117.1 167 50.9
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-24 117.1 168 51.2
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-24 117.1 167 50.9
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 1.4e-24 117.1 167 50.9
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 2.4e-24 116.3 182 50.5
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 5.4e-24 115.2 182 45.1
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 5.4e-24 115.2 175 49.1
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 9.3e-24 114.4 178 47.2
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 1.2e-23 114.0 184 46.7
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 1.6e-23 113.6 180 48.9
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.6e-23 113.6 166 51.2
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 2.1e-23 113.2 177 48.0
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.1e-23 113.2 181 46.4
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 2.7e-23 112.8 118 59.3
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 3.5e-23 112.5 168 50.6
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 3.5e-23 112.5 120 59.2
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 3.5e-23 112.5 181 48.6
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 3.5e-23 112.5 187 45.5
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 4.6e-23 112.1 114 64.9
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 6.0e-23 111.7 166 50.6
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 1.0e-22 110.9 159 50.3
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 1.0e-22 110.9 182 45.6
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 1.3e-22 110.5 168 50.0
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 1.3e-22 110.5 168 50.0
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 2.3e-22 109.8 166 50.0
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 6.6e-22 108.2 161 48.4
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 6.6e-22 108.2 178 43.8
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 6.6e-22 108.2 162 49.4
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 8.7e-22 107.8 179 46.9
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 1.1e-21 107.5 183 47.0
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 1.5e-21 107.1 163 47.2
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 5.6e-21 105.1 182 43.4
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 5.6e-21 105.1 164 47.6
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 5.6e-21 105.1 182 44.0
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 1.6e-20 103.6 127 50.4
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.6e-20 103.6 182 42.3
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.1e-20 103.2 119 55.5
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.1e-20 103.2 174 46.0
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 3.6e-20 102.4 184 44.0
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 4.8e-20 102.1 176 42.0
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 4.8e-20 102.1 182 45.6
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 8.1e-20 101.3 171 44.4
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 8.1e-20 101.3 171 41.5
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 1.4e-19 100.5 185 46.5
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 1.8e-19 100.1 128 52.3
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.8e-19 100.1 180 43.3
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.8e-19 100.1 170 42.9
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 3.1e-19 99.4 166 41.0
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 3.1e-19 99.4 173 45.1
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 5.3e-19 98.6 95 62.1
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 9.0e-19 97.8 172 43.0
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 2.0e-18 96.7 179 41.3
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 3.4e-18 95.9 183 46.4
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 3.4e-18 95.9 128 52.3
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 4.5e-18 95.5 189 45.0
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 5.8e-18 95.1 179 41.3
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.8e-18 95.1 181 42.5
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 9.9e-18 94.4 168 45.8
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 1.3e-17 94.0 183 43.2
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 1.3e-17 94.0 90 63.3
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 2.9e-17 92.8 185 42.7
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 3.8e-17 92.4 60 76.7
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.1e-16 90.9 174 42.0
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 1.4e-16 90.5 132 47.7
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.9e-16 90.1 173 40.5
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 2.4e-16 89.7 91 58.2
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 3.2e-16 89.4 106 55.7
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 3.2e-16 89.4 233 36.5
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 4.2e-16 89.0 78 60.3
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 7.1e-16 88.2 111 49.5
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 7.1e-16 88.2 123 52.0
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 3.5e-15 85.9 110 50.0
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 6.0e-15 85.1 117 49.6
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 6.0e-15 85.1 111 48.6
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 6.0e-15 85.1 102 53.9
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 2.3e-14 83.2 105 52.4
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 1.1e-13 80.9 168 41.1
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 1.5e-13 80.5 46 84.8
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 2.5e-13 79.7 68 64.7
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.6e-12 77.0 111 42.3
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 1.6e-12 77.0 53 67.9
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.6e-12 75.9 163 42.3
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 1.1e-11 74.3 173 38.2
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 2.4e-11 73.2 54 70.4
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 3.1e-11 72.8 132 43.2
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.1e-11 72.8 166 37.3
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.8e-09 65.9 111 43.2
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 4.2e-08 62.4 164 36.6
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 1.0e-06 57.8 74 44.6
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.3e-06 57.4 115 40.0
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 3.0e-06 56.2 56 53.6
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 3.0e-06 56.2 56 53.6
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 3.0e-06 56.2 128 29.7
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 3.9e-06 55.8 56 51.8
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 3.9e-06 55.8 56 51.8
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 3.9e-06 55.8 81 43.2
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 5.1e-06 55.5 56 51.8
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 5.1e-06 55.5 68 44.1
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 5.1e-06 55.5 56 51.8
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 6.7e-06 55.1 57 52.6
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 6.7e-06 55.1 49 53.1
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 8.7e-06 54.7 49 53.1
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 8.7e-06 54.7 109 32.1
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 8.7e-06 54.7 49 53.1
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 8.7e-06 54.7 83 38.6
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 8.7e-06 54.7 130 30.8
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 8.7e-06 54.7 56 51.8
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 8.7e-06 54.7 94 38.3
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 8.7e-06 54.7 56 51.8


User provided reference genes

Program Settings