Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 2.4e-184 648.7 322 100.0
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.8e-107 393.3 322 68.6
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.3e-84 317.4 316 58.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 8.5e-81 304.7 334 56.3
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.8e-78 294.7 327 56.0
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.5e-77 293.9 284 59.5
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 7.7e-74 281.6 322 53.1
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 7.7e-74 281.6 319 52.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.3e-73 280.0 320 53.4
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 2.9e-73 279.6 300 55.7
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 3.8e-73 279.3 322 54.3
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.9e-72 276.9 289 55.7
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.5e-72 276.6 322 52.2
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 3.3e-72 276.2 320 52.5
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 3.3e-72 276.2 317 53.9
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 5.6e-72 275.4 308 54.5
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 9.5e-72 274.6 324 51.2
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.2e-71 274.2 322 52.8
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 2.1e-71 273.5 295 55.6
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 4.7e-71 272.3 316 52.8
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.0e-70 271.2 319 51.1
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 2.3e-70 270.0 316 52.8
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 2.0e-69 266.9 316 51.9
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 9.8e-69 264.6 317 51.7
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.7e-68 263.8 289 53.3
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 2.9e-68 263.1 300 52.0
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 6.4e-68 261.9 318 50.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.8e-67 260.4 287 53.0
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.8e-67 260.4 300 51.3
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.4e-67 260.0 317 49.8
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 2.4e-67 260.0 288 53.1
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 3.2e-67 259.6 281 54.1
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 3.2e-67 259.6 286 52.4
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 7.0e-67 258.5 316 50.3
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 7.0e-67 258.5 318 50.6
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 9.2e-67 258.1 292 53.4
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.7e-66 256.5 300 50.7
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 5.9e-66 255.4 316 49.1
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 7.8e-66 255.0 297 50.8
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.7e-65 253.8 282 51.8
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 6.6e-65 251.9 284 51.4
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 8.6e-65 251.5 301 49.8
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.9e-64 250.4 319 48.3
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 4.3e-64 249.2 282 51.8
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 7.3e-64 248.4 302 50.0
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 7.3e-64 248.4 282 50.7
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.6e-63 247.3 307 48.2
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 2.8e-63 246.5 285 50.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.8e-63 246.5 316 48.1
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 4.7e-63 245.7 267 55.1
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 8.0e-63 245.0 302 48.7
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.8e-62 243.8 297 48.1
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 2.3e-62 243.4 298 49.0
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.0e-62 242.7 281 50.9
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 6.8e-62 241.9 297 47.5
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.5e-61 240.7 293 48.1
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.6e-61 240.0 301 48.2
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 2.6e-61 240.0 291 50.2
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 3.4e-61 239.6 283 50.9
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 3.4e-61 239.6 282 49.6
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 3.4e-61 239.6 317 48.3
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 5.8e-61 238.8 285 49.1
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 5.8e-61 238.8 292 47.3
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 7.5e-61 238.4 292 47.3
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.3e-60 237.7 278 49.3
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.7e-60 237.3 316 46.5
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.7e-60 237.3 285 49.8
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 2.2e-60 236.9 311 47.3
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 2.9e-60 236.5 313 46.6
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 6.4e-60 235.3 294 48.0
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 8.3e-60 235.0 302 47.7
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 8.3e-60 235.0 296 47.6
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 1.1e-59 234.6 302 47.0
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.4e-59 234.2 302 47.4
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.4e-59 234.2 294 47.6
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 2.4e-59 233.4 302 46.7
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 3.2e-59 233.0 283 48.8
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 4.1e-59 232.6 282 47.9
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 4.1e-59 232.6 283 48.1
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 9.2e-59 231.5 301 46.5
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.2e-58 231.1 282 47.9
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.2e-58 231.1 301 46.8
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 3.5e-58 229.6 267 50.9
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 6.0e-58 228.8 302 47.4
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 8.6e-57 224.9 292 46.6
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 8.6e-57 224.9 267 49.8
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.9e-56 223.8 292 46.2
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 4.3e-56 222.6 315 45.1
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 2.3e-54 216.9 267 47.2
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.3e-52 211.1 295 43.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 6.4e-52 208.8 234 52.1
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 1.9e-51 207.2 296 42.9
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.0e-49 201.4 292 43.5
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.0e-49 201.4 229 50.2
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.0e-49 199.9 287 42.5
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.3e-48 196.1 262 46.6
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 6.2e-47 192.2 285 41.8
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 5.2e-46 189.1 265 43.4
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 6.8e-46 188.7 242 46.3
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 9.9e-45 184.9 307 40.1
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 2.7e-42 176.8 230 45.7
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 3.5e-42 176.4 281 39.9
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.1e-40 171.4 289 37.7
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.9e-40 170.6 289 38.1
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.2e-36 157.1 109 74.3
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 3.3e-32 143.3 121 68.6
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.4e-30 137.9 109 65.1
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 9.3e-27 125.2 263 35.0
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.3e-25 121.3 263 33.5
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.8e-25 120.9 94 67.0
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 3.9e-25 119.8 94 66.0
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-24 118.2 263 33.1
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.5e-24 117.1 269 34.6
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.4e-24 115.5 94 63.8
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 8.1e-23 112.1 90 63.3
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.4e-19 100.5 229 35.4
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 5.3e-14 82.8 47 83.0
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-13 81.3 70 62.9
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.5e-13 81.3 47 80.9
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 2.1e-10 70.9 156 32.7
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 7.9e-10 68.9 55 60.0
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 7.9e-10 68.9 37 89.2
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.0e-09 68.6 36 83.3
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 6.7e-09 65.9 55 56.4
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 8.7e-09 65.5 144 32.6
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.1e-08 65.1 39 76.9
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 6.9e-06 55.8 84 44.0


User provided reference genes

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