Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1087.0 552 100.0
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 7.5e-218 760.8 492 84.1
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 4.7e-196 688.3 492 77.2
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 1.9e-189 666.4 487 75.4
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 5.8e-186 654.8 471 72.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 2.2e-185 652.9 492 70.9
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 2.9e-185 652.5 491 70.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.1e-181 640.6 472 71.4
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.1e-181 640.6 472 71.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 1.1e-181 640.6 512 68.8
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.5e-181 640.2 471 72.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.5e-181 640.2 472 71.6
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 9.5e-181 637.5 471 72.0
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 9.5e-181 637.5 512 68.2
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 4.7e-180 635.2 494 69.2
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 8.4e-177 624.4 501 67.9
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 2.4e-176 622.9 480 71.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.2e-175 620.5 492 68.3
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 3.5e-175 619.0 514 67.3
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 6.0e-175 618.2 493 68.4
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.0e-174 617.5 490 68.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.1e-173 614.0 509 66.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 1.5e-173 613.6 488 68.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 4.3e-173 612.1 471 69.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 9.6e-173 610.9 472 70.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.2e-172 610.5 472 68.4
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 1.6e-172 610.1 478 67.8
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 1.4e-171 607.1 471 69.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 8.9e-171 604.4 470 68.9
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 2.2e-169 599.7 472 67.6
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 4.9e-169 598.6 471 67.3
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.9e-169 598.6 505 64.6
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 4.9e-169 598.6 492 66.3
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 1.4e-168 597.0 481 66.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.4e-168 597.0 481 66.9
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.4e-168 597.0 484 67.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 1.9e-168 596.7 504 64.3
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 7.1e-168 594.7 481 66.5
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 9.3e-168 594.3 481 66.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 9.3e-168 594.3 469 69.3
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.2e-167 594.0 487 66.5
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.6e-167 593.6 481 66.7
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 2.7e-167 592.8 469 69.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 6.0e-167 591.7 471 65.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 2.3e-166 589.7 479 65.8
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.0e-166 589.3 481 65.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 3.9e-166 589.0 471 65.6
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 6.6e-166 588.2 471 66.9
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 8.7e-166 587.8 471 66.0
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.3e-165 585.5 484 64.5
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 1.8e-163 580.1 490 65.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 2.4e-163 579.7 471 66.5
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 2.4e-163 579.7 506 62.1
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 4.0e-163 578.9 494 66.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 1.2e-162 577.4 469 67.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 1.2e-162 577.4 503 64.0
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 3.4e-162 575.9 506 61.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 4.4e-162 575.5 468 65.4
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 4.4e-162 575.5 469 66.5
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 2.2e-161 573.2 468 64.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 4.9e-161 572.0 473 63.8
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 8.4e-161 571.2 471 64.5
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 8.4e-161 571.2 577 56.0
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 5.4e-160 568.5 478 64.4
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 3.5e-159 565.8 472 65.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 1.0e-158 564.3 469 64.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.9e-158 562.4 497 64.4
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 5.1e-158 562.0 469 64.2
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 6.6e-158 561.6 471 63.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 4.3e-157 558.9 479 63.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 4.3e-157 558.9 469 64.2
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 5.6e-157 558.5 473 62.8
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 1.3e-156 557.4 469 64.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 1.6e-156 557.0 479 62.8
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 1.6e-156 557.0 479 62.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 3.6e-156 555.8 487 62.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 8.1e-156 554.7 471 63.3
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 8.1e-156 554.7 471 64.1
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 3.1e-155 552.7 493 62.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 4.0e-155 552.4 479 62.0
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 4.0e-155 552.4 471 61.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 6.9e-155 551.6 479 62.0
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.2e-154 550.8 479 62.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.8e-154 548.5 440 68.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 5.8e-154 548.5 471 63.1
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 2.9e-153 546.2 490 60.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 6.4e-153 545.0 492 61.4
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 2.1e-151 540.0 471 60.7
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.1e-151 540.0 471 61.8
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 4.6e-151 538.9 469 61.6
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 3.9e-150 535.8 473 61.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 8.7e-150 534.6 504 59.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 4.8e-148 528.9 471 60.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 1.1e-147 527.7 470 60.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.2e-145 520.0 471 59.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 1.8e-142 510.4 503 56.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 7.4e-141 505.0 471 58.4
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 5.3e-139 498.8 479 59.5
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.4e-136 490.7 437 61.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.3e-134 483.4 469 56.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 5.1e-134 482.3 439 58.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 3.7e-132 476.1 473 55.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.5e-130 470.7 482 54.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 3.8e-129 466.1 489 55.2
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 1.4e-128 464.2 506 52.2
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.3e-123 445.7 505 49.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.4e-118 431.0 469 55.2
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-104 384.4 409 51.3
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.4e-102 377.9 482 46.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 9.1e-99 365.2 332 62.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.3e-89 334.7 486 39.3
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.1e-87 325.9 471 39.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.8e-86 324.3 471 40.1
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.3e-73 281.6 497 36.0
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 5.0e-73 279.6 346 48.3
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.2e-66 258.5 474 34.8
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.6e-63 246.9 513 37.4
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.4e-62 245.0 383 41.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.3e-62 244.2 495 36.8
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.1e-62 243.8 495 36.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 3.9e-57 226.9 502 35.7
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.8e-46 191.4 109 88.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.1e-34 151.4 245 37.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.3e-15 89.0 240 29.6
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.7e-15 87.4 38 100.0
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 9.7e-08 62.8 51 58.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.7e-07 60.8 60 61.7
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.4e-06 58.2 114 28.9
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 4.1e-06 57.4 36 75.0


User provided reference genes

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