Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1647.1 836 100.0
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1410.6 836 88.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1330.1 836 82.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1292.7 835 80.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1230.3 836 76.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1217.2 836 76.1
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1211.8 836 75.2
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1196.0 839 74.0
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1195.3 838 74.5
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1193.3 836 73.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1192.9 836 74.0
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1184.5 834 73.1
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1181.4 836 73.6
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1176.0 837 73.5
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1174.1 836 73.3
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1172.1 834 73.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1172.1 836 73.2
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1166.0 836 72.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1155.2 836 71.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1153.3 836 72.5
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1152.5 834 71.5
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1152.1 834 71.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1151.3 834 71.3
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1149.0 836 70.7
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1147.9 834 71.3
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1147.1 834 71.1
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1146.0 834 71.1
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1143.3 834 71.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1140.9 834 70.7
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1134.4 835 70.8
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1133.6 836 70.9
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1132.1 839 70.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1131.3 836 70.9
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1122.1 834 70.9
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1113.6 809 71.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1112.1 836 69.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1111.7 837 69.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1110.9 836 69.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1110.9 834 69.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1109.7 835 68.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1108.2 851 68.7
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1107.0 834 69.4
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1107.0 837 69.7
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1106.3 837 69.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1103.6 836 67.6
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1100.9 836 68.7
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1096.6 836 69.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1092.4 809 71.1
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1088.6 836 68.2
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1078.2 837 67.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 5.7e-312 1074.7 836 67.7
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 5.7e-312 1074.3 836 66.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.5e-310 1069.3 814 67.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 9.6e-310 1066.6 840 66.9
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 3.7e-309 1064.7 837 67.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 6.2e-309 1063.9 836 66.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 1.5e-307 1059.3 837 67.0
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.0e-307 1058.9 836 64.1
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 3.4e-307 1058.1 836 65.4
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 3.8e-306 1054.7 837 66.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 3.2e-305 1051.6 836 64.7
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.2e-305 1051.2 836 65.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 2.7e-304 1048.5 838 64.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.8e-303 1045.8 836 65.3
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 6.7e-303 1043.9 836 67.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 1.9e-302 1042.3 834 64.5
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 3.7e-301 1038.1 838 64.4
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 3.7e-301 1038.1 836 64.6
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 4.8e-301 1037.7 822 66.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 3.1e-300 1035.0 836 64.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.2e-299 1033.1 822 66.2
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 3.4e-299 1031.6 837 64.4
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 5.9e-299 1030.8 837 64.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.1e-297 1026.5 836 63.9
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 1.2e-296 1023.1 875 62.6
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 2.0e-294 1015.8 814 65.7
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 7.4e-294 1013.8 822 65.2
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 9.7e-294 1013.4 835 63.0
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 1.7e-293 1012.7 836 63.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 3.7e-293 1011.5 836 65.9
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.4e-292 1009.6 836 62.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 4.1e-292 1008.1 836 61.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 4.1e-292 1008.1 837 62.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 5.9e-291 1004.2 834 62.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.2e-290 1002.3 810 64.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 4.2e-289 998.0 838 62.4
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 6.1e-288 994.2 838 63.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 1.4e-287 993.0 836 62.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 1.1e-286 989.9 836 61.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 2.6e-283 978.8 749 68.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 1.4e-281 973.0 848 59.8
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 4.5e-275 951.4 837 61.6
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 4.4e-270 934.9 836 61.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 2.0e-267 926.0 834 59.2
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.3e-266 923.3 835 60.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 7.5e-254 880.9 651 70.0
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 1.3e-253 880.2 840 56.8
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 7.8e-251 870.9 842 57.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 5.0e-242 841.6 650 67.1
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 9.5e-241 837.4 821 55.5
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.0e-238 829.7 838 55.0
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.8e-235 817.8 825 53.2
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-199 700.3 578 62.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.4e-185 651.7 547 61.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 7.2e-180 635.2 800 49.0
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 1.0e-173 614.8 590 58.5
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.0e-173 614.8 423 74.5
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.1e-172 611.3 520 62.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.7e-171 606.7 706 48.6
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-167 594.7 706 47.9
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-165 587.4 705 48.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 8.5e-165 585.1 706 47.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 4.5e-158 562.8 816 44.2
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 3.5e-150 536.6 453 62.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 3.5e-150 536.6 453 62.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.7e-144 517.7 780 40.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 8.6e-141 505.4 780 42.3
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.5e-140 504.6 777 39.6
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.9e-132 477.6 758 38.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 3.4e-129 466.8 321 74.8
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-116 425.2 297 73.7
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 3.4e-113 413.7 763 35.4
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.1e-92 345.5 427 46.4
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-82 312.4 210 74.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 9.3e-79 299.3 217 70.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.3e-75 288.9 267 55.4
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 5.7e-68 263.5 187 72.7
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 5.5e-63 246.9 220 60.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.7e-60 236.9 289 49.5
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.4e-50 204.9 481 31.6
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.7e-49 199.9 485 29.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.2e-39 166.8 257 41.6
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.0e-29 136.3 859 21.2
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.6e-25 122.5 96 66.7
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 3.6e-22 111.3 481 22.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.3e-21 108.6 203 36.5
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.0e-16 91.7 90 55.6
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 5.6e-15 87.4 98 50.0
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 7.3e-15 87.0 38 100.0
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 2.8e-14 85.1 172 40.1
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 3.1e-13 81.6 63 68.3
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 6.8e-13 80.5 79 54.4
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.5e-12 79.3 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.5e-12 79.3 50 80.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.6e-12 78.6 78 57.7
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 6.4e-11 73.9 76 50.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.4e-10 72.0 76 51.3
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 5.4e-10 70.9 317 24.9
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 9.2e-10 70.1 65 61.5
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 2.7e-09 68.6 65 60.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 4.6e-09 67.8 62 59.7


User provided reference genes

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