Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 3.9e-93 344.7 168 100.0
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 4.9e-88 327.8 167 95.2
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 3.9e-85 318.2 167 94.0
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.4e-82 309.7 151 98.7
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.4e-82 308.9 167 91.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 6.9e-82 307.4 167 91.0
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 2.6e-81 305.4 167 85.6
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.4e-81 305.1 167 88.6
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.4e-81 305.1 167 89.2
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 7.6e-81 303.9 167 89.2
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 7.6e-81 303.9 167 89.2
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.3e-80 303.1 167 86.8
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.9e-80 302.0 167 89.2
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 6.4e-80 300.8 168 88.1
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 6.4e-80 300.8 167 86.2
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.4e-79 299.7 167 86.8
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.4e-79 299.7 172 87.8
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.4e-79 299.7 167 84.4
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.9e-79 299.3 151 96.0
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 2.4e-79 298.9 167 88.6
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.2e-79 298.1 167 88.0
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 4.2e-79 298.1 167 85.0
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 5.5e-79 297.7 166 84.3
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 5.5e-79 297.7 167 85.6
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.5e-79 297.7 167 86.8
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 7.1e-79 297.4 167 85.0
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.6e-78 296.2 167 84.4
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 2.1e-78 295.8 167 88.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 2.1e-78 295.8 167 88.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 2.1e-78 295.8 167 88.0
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 3.5e-78 295.0 167 88.0
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 4.6e-78 294.7 167 87.4
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.0e-77 293.5 167 86.2
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.0e-77 293.5 167 83.2
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.0e-77 293.5 167 87.4
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.3e-77 293.1 167 83.2
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.8e-77 292.7 167 82.6
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 85.0
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 82.6
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 82.6
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 87.4
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 87.4
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 85.6
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.3e-77 292.4 167 84.4
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.9e-77 291.6 167 83.2
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.9e-77 291.6 167 82.0
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.1e-77 291.2 167 82.0
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 5.1e-77 291.2 167 84.4
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 6.7e-77 290.8 166 84.3
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 6.7e-77 290.8 167 82.0
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 6.7e-77 290.8 167 83.8
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 8.7e-77 290.4 167 86.8
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.5e-76 289.7 167 84.4
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.5e-76 289.7 167 85.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.9e-76 289.3 167 86.2
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.5e-76 288.9 167 86.8
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 2.5e-76 288.9 167 83.8
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 3.3e-76 288.5 167 82.0
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.3e-76 288.5 167 83.8
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 3.3e-76 288.5 167 87.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.3e-76 288.5 167 81.4
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.3e-76 288.5 168 84.5
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.3e-76 288.1 167 83.2
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 5.6e-76 287.7 161 89.4
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.4e-76 287.3 167 86.2
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.4e-76 287.3 167 86.2
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 7.4e-76 287.3 169 82.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 9.6e-76 287.0 168 82.1
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.6e-75 286.2 168 85.1
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.6e-75 286.2 167 85.0
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.1e-75 285.8 167 82.6
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.8e-75 285.4 169 82.2
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 4.8e-75 284.6 167 83.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.2e-75 284.3 167 83.8
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 8.1e-75 283.9 167 83.2
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.1e-74 283.5 167 85.6
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.4e-74 282.3 167 83.8
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 3.1e-74 282.0 167 82.0
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 3.1e-74 282.0 167 82.6
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.0e-74 281.6 167 84.4
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 4.0e-74 281.6 167 82.6
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 9.0e-74 280.4 166 82.5
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.2e-73 280.0 166 80.7
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 1.5e-73 279.6 167 82.6
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.0e-73 279.3 166 80.7
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.6e-73 278.9 169 81.7
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.6e-73 278.9 165 81.8
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 3.4e-73 278.5 167 80.8
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 3.4e-73 278.5 166 80.7
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 4.5e-73 278.1 167 82.6
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 5.8e-73 277.7 167 79.0
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 7.6e-73 277.3 167 81.4
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 7.6e-73 277.3 167 80.8
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-72 276.6 166 78.9
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.3e-72 276.6 167 78.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.7e-72 276.2 167 80.8
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.2e-72 275.8 166 80.1
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.2e-72 275.8 170 80.6
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.9e-72 275.4 166 80.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.9e-72 275.4 166 80.1
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 2.9e-72 275.4 166 80.1
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.9e-72 275.4 155 87.7
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 2.9e-72 275.4 166 80.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 6.5e-72 274.2 166 79.5
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.5e-71 272.3 167 79.0
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.2e-71 271.9 167 80.8
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 4.2e-71 271.6 167 77.2
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 7.1e-71 270.8 166 78.3
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.2e-70 270.0 156 82.1
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.2e-70 270.0 167 82.0
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.6e-70 269.6 167 77.8
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 4.6e-70 268.1 219 66.7
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 1.3e-69 266.5 168 75.0
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 5.1e-69 264.6 167 76.6
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 8.7e-69 263.8 168 75.0
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 8.7e-69 263.8 163 77.9
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-68 263.5 166 75.3
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 2.5e-68 262.3 169 76.3
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.5e-68 262.3 166 74.7
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 2.5e-68 262.3 167 76.6
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 9.6e-68 260.4 166 74.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.6e-67 259.6 163 76.7
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 6.3e-67 257.7 154 80.5
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 8.2e-67 257.3 154 80.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 3.1e-66 255.4 168 74.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 4.1e-66 255.0 158 80.4
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.5e-65 253.1 151 81.5
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.7e-64 249.6 168 72.0
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.7e-64 249.6 168 72.0
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.2e-62 243.4 167 71.3
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 7.9e-62 240.7 167 67.1
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.3e-60 235.3 165 67.3
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 6.3e-59 231.1 164 65.9
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 5.3e-58 228.0 170 65.3
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 6.9e-58 227.6 170 65.3
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.6e-54 215.3 139 76.3
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 4.5e-49 198.4 114 83.3
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-48 197.2 114 86.0
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-48 197.2 114 86.0
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.2e-48 196.1 114 84.2
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.5e-47 191.4 114 81.6
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 7.2e-47 191.0 117 83.8
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.7e-46 189.1 113 79.6
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.3e-43 180.3 180 50.6
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.7e-38 162.5 86 86.0
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.4e-37 160.2 95 84.2
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.0e-37 158.7 106 71.7
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 5.2e-37 158.3 166 48.8
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.7e-37 157.9 99 73.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.7e-36 154.8 103 71.8
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.0e-28 129.8 109 59.6
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-24 116.3 60 85.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 8.5e-24 114.4 157 40.8
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.4e-20 102.4 118 48.3
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 4.4e-20 102.1 54 88.9
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 7.5e-20 101.3 118 47.5
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.4e-18 97.1 129 41.9
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 2.4e-18 96.3 155 36.8
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 4.1e-18 95.5 52 88.5
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.8e-16 89.0 48 87.5
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 8.6e-16 87.8 62 74.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.3e-15 85.9 50 84.0
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-14 81.6 86 51.2
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 9.5e-07 57.8 72 52.8
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.1e-06 56.6 35 71.4


User provided reference genes

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