Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 1.1e-133 479.9 247 100.0
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 6.8e-86 321.2 190 87.4
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 9.1e-83 310.8 196 84.2
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 6.2e-63 245.0 193 71.0
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.7e-60 236.9 195 69.7
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 4.3e-56 222.2 194 62.9
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 4.3e-56 222.2 191 63.9
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 7.3e-56 221.5 206 61.2
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.6e-55 220.3 197 62.9
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 2.8e-55 219.5 202 61.9
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 3.6e-55 219.2 188 63.8
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 4.7e-55 218.8 198 61.6
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 1.8e-54 216.9 198 63.1
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 5.2e-54 215.3 203 62.6
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 6.8e-54 214.9 198 58.6
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 3.4e-53 212.6 190 61.6
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 3.4e-53 212.6 190 61.1
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 7.6e-53 211.5 190 61.1
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 1.3e-52 210.7 188 62.2
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 1.7e-52 210.3 198 59.6
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 4.9e-52 208.8 195 59.0
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 4.9e-52 208.8 194 61.3
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 6.4e-52 208.4 190 61.1
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 6.4e-52 208.4 194 60.3
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.1e-51 207.6 193 60.1
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 3.2e-51 206.1 191 61.3
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 5.4e-51 205.3 188 60.1
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 7.1e-51 204.9 195 58.5
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 9.2e-51 204.5 190 59.5
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 2.1e-50 203.4 190 58.4
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 2.1e-50 203.4 193 59.6
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 2.7e-50 203.0 189 62.4
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 2.7e-50 203.0 188 61.2
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 3.5e-50 202.6 190 60.0
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 3.5e-50 202.6 189 60.3
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 3.5e-50 202.6 189 61.9
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 4.6e-50 202.2 190 58.9
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 4.6e-50 202.2 190 58.9
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 4.6e-50 202.2 188 60.6
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 6.0e-50 201.8 190 60.0
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 6.0e-50 201.8 188 59.0
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.7e-49 200.3 188 61.2
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.7e-49 200.3 198 57.1
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 3.0e-49 199.5 188 59.0
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 3.9e-49 199.1 190 57.4
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 3.9e-49 199.1 200 57.0
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 5.1e-49 198.7 193 59.1
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 6.6e-49 198.4 193 59.1
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 6.6e-49 198.4 189 59.3
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 8.6e-49 198.0 203 58.6
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 1.1e-48 197.6 188 58.5
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.1e-48 197.6 188 60.1
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.1e-48 197.6 194 58.8
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 1.5e-48 197.2 186 59.1
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 1.5e-48 197.2 194 57.7
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 2.5e-48 196.4 189 57.7
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 2.5e-48 196.4 189 60.3
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 5.6e-48 195.3 190 57.4
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 1.6e-47 193.7 191 57.6
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 2.1e-47 193.4 196 54.6
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 2.1e-47 193.4 193 58.0
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 4.7e-47 192.2 190 57.4
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 6.2e-47 191.8 190 56.8
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 1.4e-46 190.7 193 57.5
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 5.2e-46 188.7 192 58.9
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 5.2e-46 188.7 194 55.2
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 5.2e-46 188.7 191 57.6
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 5.2e-46 188.7 198 55.1
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.5e-45 187.2 188 56.4
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 1.5e-45 187.2 190 57.4
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 2.6e-45 186.4 195 55.9
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 2.6e-45 186.4 193 56.5
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 2.6e-45 186.4 189 57.1
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 3.4e-45 186.0 205 54.6
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 3.4e-45 186.0 191 52.9
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 4.4e-45 185.7 190 55.8
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 9.9e-45 184.5 191 55.5
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 1.7e-44 183.7 197 51.3
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 1.7e-44 183.7 190 51.1
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 4.9e-44 182.2 200 53.5
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 6.4e-44 181.8 192 57.3
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 1.1e-43 181.0 191 50.8
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.4e-43 180.6 199 54.8
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.9e-43 180.3 192 57.3
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 2.4e-43 179.9 192 56.8
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 3.2e-43 179.5 188 51.6
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 4.2e-43 179.1 188 53.2
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 4.2e-43 179.1 188 53.2
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 4.2e-43 179.1 191 54.5
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 7.1e-43 178.3 195 52.8
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 9.3e-43 177.9 196 54.6
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.2e-42 177.6 204 53.4
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 1.6e-42 177.2 188 51.1
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.6e-42 177.2 200 53.5
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 2.7e-42 176.4 198 52.0
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 2.7e-42 176.4 196 54.1
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.6e-42 175.6 200 53.0
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.6e-42 175.6 200 53.0
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 6.0e-42 175.3 194 54.1
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 7.8e-42 174.9 191 54.5
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 7.8e-42 174.9 206 47.6
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 1.0e-41 174.5 192 51.0
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 1.0e-41 174.5 194 52.1
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 2.3e-41 173.3 188 55.3
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 3.0e-41 172.9 191 51.3
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 3.0e-41 172.9 196 54.6
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 3.0e-41 172.9 193 52.3
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 3.9e-41 172.6 191 51.3
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 5.1e-41 172.2 188 52.1
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 6.6e-41 171.8 188 51.6
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 6.6e-41 171.8 189 50.8
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 8.7e-41 171.4 189 52.9
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 8.7e-41 171.4 188 51.1
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 1.5e-40 170.6 189 49.7
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.9e-40 170.2 195 54.4
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 2.5e-40 169.9 190 52.6
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 3.3e-40 169.5 190 54.2
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 5.6e-40 168.7 189 52.9
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 7.3e-40 168.3 190 50.5
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.6e-39 166.0 186 54.8
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 4.8e-39 165.6 165 58.8
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 8.1e-39 164.9 188 49.5
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.1e-38 164.5 190 50.0
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.4e-38 164.1 171 56.1
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 9.0e-38 161.4 188 48.9
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 2.0e-37 160.2 188 48.4
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 7.6e-37 158.3 197 48.7
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 2.2e-36 156.8 211 43.6
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 1.4e-35 154.1 188 47.9
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.9e-35 153.7 196 50.5
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 2.4e-35 153.3 198 43.9
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 5.4e-35 152.1 97 79.4
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 1.0e-33 147.9 200 46.5
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.0e-33 146.4 190 48.9
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 6.6e-33 145.2 170 54.1
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 6.6e-33 145.2 199 45.7
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 8.7e-33 144.8 193 45.6
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 1.5e-32 144.1 199 46.2
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.5e-32 143.3 170 54.7
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 4.3e-32 142.5 169 54.4
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 5.6e-32 142.1 194 46.9
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 4.8e-31 139.0 94 69.1
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 4.5e-29 132.5 193 40.9
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 3.2e-27 126.3 215 41.9
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 3.2e-27 126.3 194 44.3
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 4.2e-27 125.9 194 44.3
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 7.4e-24 115.2 78 82.1
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 1.6e-23 114.0 193 40.4
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 1.2e-21 107.8 78 66.7
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.5e-21 107.5 260 34.2
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 2.0e-21 107.1 81 61.7
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 4.5e-21 105.9 81 61.7
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 2.9e-20 103.2 125 50.4
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.9e-20 103.2 193 38.3
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 4.9e-20 102.4 81 55.6
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 8.4e-20 101.7 217 35.0
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 1.4e-19 100.9 248 32.7
Manes.12G071300 Manihot esculenta HOM05D003373 ORTHO05D004419 1.9e-19 100.5 69 72.5
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.9e-19 100.5 258 31.0
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.9e-19 100.5 258 31.0
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 4.6e-18 95.9 165 44.2
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 2.3e-17 93.6 263 28.5
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 1.1e-16 91.3 239 33.5
SalBow8G0677 Salvia bowleyana HOM05D003373 ORTHO05D004419 4.1e-14 82.8 78 57.7
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 3.4e-13 79.7 98 38.8
Medtr5g037970 Medicago truncatula HOM05D003373 ORTHO05D004419 1.7e-12 77.4 109 45.0
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 5.0e-12 75.9 112 48.2
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 4.6e-10 69.3 193 31.1
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 5.1e-09 65.9 75 45.3
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 6.7e-09 65.5 49 71.4
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 7.4e-08 62.0 76 55.3
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 2.2e-07 60.5 102 50.0
Peaxi162Scf00026g00225 Petunia axillaris HOM05D003373 ORTHO05D004419 4.1e-06 56.2 57 56.1


User provided reference genes

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