Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04244 Corylus avellana HOM05D006966 ORTHO05D008111 4.2e-75 285.0 195 100.0
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 5.9e-61 238.0 214 80.4
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 5.8e-40 168.3 239 59.8
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 4.6e-37 158.7 216 58.8
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 2.9e-31 139.4 199 57.3
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 1.4e-30 137.1 227 57.3
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 3.5e-29 132.5 207 55.1
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 1.3e-28 130.6 198 49.0
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 8.7e-28 127.9 199 55.3
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.1e-27 127.5 207 58.5
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 3.3e-27 125.9 219 55.3
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 3.3e-27 125.9 212 51.9
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 4.3e-27 125.6 202 46.5
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 2.8e-26 122.9 203 45.3
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 4.8e-26 122.1 207 49.8
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 9.0e-25 117.9 212 57.1
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 1.2e-24 117.5 196 58.7
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 1.2e-24 117.5 208 41.3
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 1.5e-24 117.1 220 52.7
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 2.0e-24 116.7 198 61.1
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 5.8e-24 115.2 205 51.2
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 7.6e-24 114.8 211 55.5
Manes.08G123800 Manihot esculenta HOM05D006966 ORTHO05D008111 7.6e-24 114.8 182 50.5
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 2.2e-23 113.2 213 48.8
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 3.8e-23 112.5 119 52.1
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 6.4e-23 111.7 183 40.4
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 4.2e-22 109.0 177 49.2
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 4.2e-22 109.0 212 50.5
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 5.4e-22 108.6 201 49.3
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 9.3e-22 107.8 207 52.7
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 9.3e-22 107.8 200 43.0
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 9.3e-22 107.8 208 49.5
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 3.5e-21 105.9 183 55.7
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 4.6e-21 105.5 203 50.7
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 6.0e-21 105.1 210 40.5
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 7.9e-21 104.8 224 46.0
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 7.9e-21 104.8 212 46.7
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 1.8e-20 103.6 241 36.9
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.0e-20 102.8 205 52.7
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 1.1e-19 100.9 206 54.4
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.9e-19 100.1 200 41.5
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.9e-19 100.1 200 41.5
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.3e-19 99.0 200 41.0
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.3e-19 99.0 200 41.0
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.3e-19 99.0 200 41.0
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.3e-19 99.0 207 54.1
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 4.3e-19 99.0 200 36.5
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 5.6e-19 98.6 200 39.5
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 2.8e-18 96.3 193 41.5
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 2.8e-18 96.3 172 47.7
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 3.7e-18 95.9 173 48.0
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 8.1e-18 94.7 177 41.8
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 1.1e-17 94.4 116 49.1
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 1.4e-17 94.0 249 48.6
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 1.4e-17 94.0 220 46.8
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 3.1e-17 92.8 119 47.9
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 1.2e-16 90.9 119 47.1
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 1.2e-16 90.9 174 44.8
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 2.0e-16 90.1 174 43.1
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 2.6e-16 89.7 170 49.4
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 3.4e-16 89.4 118 48.3
Sopen00g012390 Solanum pennellii HOM05D006966 ORTHO05D008111 3.4e-16 89.4 97 52.6
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 5.8e-16 88.6 116 45.7
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 5.8e-16 88.6 202 33.7
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 9.9e-16 87.8 202 33.7
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 1.3e-15 87.4 173 45.1
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.3e-15 87.4 203 33.5
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 6.4e-15 85.1 191 41.9
COL.COLO4_13529 Corchorus olitorius HOM05D006966 ORTHO05D008111 1.9e-14 83.6 218 37.2
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 2.4e-14 83.2 225 46.2
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 3.2e-14 82.8 113 41.6
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 1.2e-13 80.9 118 42.4
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 1.6e-13 80.5 195 44.1
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 2.7e-13 79.7 115 40.9
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 3.5e-13 79.3 120 40.8
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 3.5e-13 79.3 119 46.2
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 4.6e-13 79.0 115 40.0
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 6.0e-13 78.6 112 44.6
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 1.0e-12 77.8 117 45.3
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 1.8e-12 77.0 112 42.0
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.3e-12 76.6 63 58.7
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 3.0e-12 76.3 115 40.9
Ah.06g190190 Amaranthus hybridus HOM05D006966 ORTHO05D008111 3.9e-12 75.9 125 39.2
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 5.1e-12 75.5 99 47.5
CDE11G0954 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 1.5e-11 73.9 116 42.2
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 1.9e-11 73.6 119 42.0
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 9.6e-11 71.2 109 41.3
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 2.1e-10 70.1 128 37.5
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 2.8e-10 69.7 248 34.7
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 3.7e-10 69.3 116 37.1
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 6.2e-10 68.6 118 37.3
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 9.0e-09 64.7 127 38.6
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 2.0e-08 63.5 112 38.4
TWI36G1607 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 2.0e-08 63.5 106 60.4
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 5.8e-08 62.0 201 31.8
Glyma.20G231100 Glycine max HOM05D006966 ORTHO05D008111 5.8e-08 62.0 124 36.3
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 5.8e-08 62.0 122 36.1
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 5.8e-08 62.0 117 35.9
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 1.0e-07 61.2 192 38.0
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 1.3e-07 60.8 191 30.9
Peaxi162Scf00071g00710 Petunia axillaris HOM05D006966 ORTHO05D008111 1.3e-07 60.8 122 36.9
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 2.9e-07 59.7 124 34.7
DCAR_022251 Daucus carota HOM05D006966 ORTHO05D008111 3.8e-07 59.3 119 33.6
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 1.1e-06 57.8 120 33.3
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 1.1e-06 57.8 125 32.0
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.1e-06 57.8 117 35.9
Ah.04g159860 Amaranthus hybridus HOM05D006966 ORTHO05D008111 2.5e-06 56.6 100 41.0
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 3.2e-06 56.2 131 32.8
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 4.2e-06 55.8 125 31.2
Ca_10083_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 4.2e-06 55.8 76 51.3
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 4.2e-06 55.8 129 31.0
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 5.5e-06 55.5 123 31.7
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 9.3e-06 54.7 100 37.0
HPP92_011806 Vanilla planifolia HOM05D006966 ORTHO05D008111 9.3e-06 54.7 118 39.0


User provided reference genes

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