Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04211 Corylus avellana HOM05D008052 ORTHO05D010155 2.3e-76 288.9 150 100.0
Cfa006570 Carpinus fangiana HOM05D008052 ORTHO05D010155 5.1e-52 208.0 150 79.3
Cfa006565 Carpinus fangiana HOM05D008052 ORTHO05D010155 3.1e-41 172.2 142 63.4
CiPaw.07G021600 Carya illinoinensis HOM05D008052 ORTHO05D010155 2.9e-39 165.6 144 61.8
Haze_04214 Corylus avellana HOM05D008052 ORTHO05D010155 1.0e-36 157.1 113 80.5
QL02p094100 Quercus lobata HOM05D008052 ORTHO05D010155 1.3e-36 156.8 147 61.9
Cfa012653 Carpinus fangiana HOM05D008052 ORTHO05D010155 4.6e-29 131.7 78 80.8
Manes.09G165300 Manihot esculenta HOM05D008052 ORTHO05D010155 9.6e-27 124.0 147 46.9
Potri.013G024500 Populus trichocarpa HOM05D008052 ORTHO05D010155 1.4e-25 120.2 149 46.3
Prupe.6G328200 Prunus persica HOM05D008052 ORTHO05D010155 1.8e-25 119.8 154 48.1
Sabra13G0025900 Salix brachista HOM05D008052 ORTHO05D010155 2.4e-25 119.4 149 49.0
ClCG02G015920 Citrullus lanatus HOM05D008052 ORTHO05D010155 1.7e-23 113.2 146 42.5
CsaV3_2G005120 Cucumis sativus L. HOM05D008052 ORTHO05D000003 1.7e-23 113.2 142 43.0
MELO3C004280.2 Cucumis melo HOM05D008052 ORTHO05D010155 2.2e-23 112.8 148 43.2
CANSAT54G0621 Cannabis sativa HOM05D008052 ORTHO05D010155 1.2e-21 107.1 157 41.4
FvH4_6g05580 Fragaria vesca HOM05D008052 ORTHO05D010155 3.9e-20 102.1 154 42.9
TAR633G0175 Trochodendron aralioides HOM05D008052 ORTHO05D010155 1.5e-19 100.1 143 42.7
FAN05G1355 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-19 99.8 140 42.9
FAN05G4790 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-19 99.8 140 42.9
FAN14G3020 Fragaria x ananassa HOM05D008052 ORTHO05D010155 2.5e-19 99.4 154 42.2
Atru.chr2.447 Acer truncatum HOM05D008052 ORTHO05D010155 9.7e-19 97.4 154 47.4
Duzib106G0088 Durio zibethinus HOM05D008052 ORTHO05D010155 2.2e-18 96.3 163 36.2
Cpa.g.sc48.31 Carica papaya HOM05D008052 ORTHO05D010155 2.4e-17 92.8 150 40.7
Ciclev10003106m.g Citrus clementina HOM05D008052 ORTHO05D010155 3.1e-17 92.4 134 40.3
Gohir.D11G310900 Gossypium hirsutum HOM05D008052 ORTHO05D010155 3.1e-17 92.4 152 38.8
TWI56G0838 Tripterygium wilfordii HOM05D008052 ORTHO05D010155 4.1e-17 92.0 133 39.1
Gohir.A11G296000 Gossypium hirsutum HOM05D008052 ORTHO05D010155 6.9e-17 91.3 146 37.7
RcHm_v2.0_Chr3g0454361 Rosa chinensis HOM05D008052 ORTHO05D010155 6.9e-17 91.3 151 38.4
Thecc.05G305400 Theobroma cacao HOM05D008052 ORTHO05D010155 6.9e-17 91.3 152 39.5
TAR362G0883 Trochodendron aralioides HOM05D008052 ORTHO05D010155 6.9e-17 91.3 144 40.3
Gorai.007G342900 Gossypium raimondii HOM05D008052 ORTHO05D010155 1.2e-16 90.5 152 37.5
MD12G1221400 Malus domestica HOM05D008052 ORTHO05D010155 2.0e-16 89.7 156 46.2
PGR031G3742 Punica granatum HOM05D008052 ORTHO05D010155 2.6e-16 89.4 152 36.8
COL.COLO4_13498 Corchorus olitorius HOM05D008052 ORTHO05D010155 7.6e-16 87.8 151 37.1
Migut.N01951 Erythranthe guttata HOM05D008052 ORTHO05D010155 7.6e-16 87.8 150 38.7
Cfa021083 Carpinus fangiana HOM05D008052 ORTHO05D010155 1.0e-15 87.4 55 74.5
Cfa000827 Carpinus fangiana HOM05D008052 ORTHO05D010155 1.7e-15 86.7 94 51.1
Sed0020219 Sechium edule HOM05D008052 ORTHO05D010155 2.5e-14 82.8 142 34.5
DCAR_022183 Daucus carota HOM05D008052 ORTHO05D010155 4.2e-14 82.0 143 36.4
FAN14G1634 Fragaria x ananassa HOM05D008052 ORTHO05D010155 1.2e-13 80.5 156 39.1
Nitab4.5_0000743g0110 Nicotiana tabacum HOM05D008052 ORTHO05D010155 3.6e-13 79.0 144 40.3
MD04G1207300 Malus domestica HOM05D008052 ORTHO05D010155 1.0e-12 77.4 149 42.3
Sc09g0003250 Simmondsia chinensis HOM05D008052 ORTHO05D010155 1.0e-12 77.4 142 34.5
Nitab4.5_0004570g0050 Nicotiana tabacum HOM05D008052 ORTHO05D010155 3.9e-12 75.5 125 37.6
Cc02_g33610 Coffea canephora HOM05D008052 ORTHO05D010155 8.8e-12 74.3 149 34.2
SalBow3G2994 Salvia bowleyana HOM05D008052 ORTHO05D010155 3.3e-11 72.4 157 34.4
Sed0004902 Sechium edule HOM05D008052 ORTHO05D010155 4.3e-11 72.0 146 36.3
Nn4g26221 Nelumbo nucifera HOM05D008052 ORTHO05D010155 7.4e-11 71.2 151 35.1
MSTRG.28007 Avicennia marina HOM05D008052 ORTHO05D010155 3.7e-10 68.9 133 33.1
Sp2g20660 Schrenkiella parvula HOM05D008052 ORTHO05D010155 1.8e-09 66.6 144 32.6
Sopen12g003550 Solanum pennellii HOM05D008052 ORTHO05D010155 1.8e-09 66.6 148 33.1
AT5G27440 Arabidopsis thaliana HOM05D008052 ORTHO05D010155 9.1e-09 64.3 149 32.9
Thhalv10005402m.g Eutrema salsugineum HOM05D008052 ORTHO05D010155 1.0e-07 60.8 146 31.5
Aqoxy2G03290 Aquilegia oxysepala HOM05D008052 ORTHO05D010155 1.3e-07 60.5 100 36.0
Psat0s1377g0280 Pisum sativum HOM05D014832 ORTHO05D016666 2.5e-06 56.2 142 28.9
A06p37460 Brassica napus HOM05D008052 ORTHO05D010155 3.2e-06 55.8 143 30.1
BraA06t26670Z Brassica rapa HOM05D008052 ORTHO05D010155 3.2e-06 55.8 143 30.1
Carub.0006s2509 Capsella rubella HOM05D008052 ORTHO05D010155 7.2e-06 54.7 145 32.4


User provided reference genes

Program Settings