Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 4.7e-211 737.6 385 100.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.1e-205 717.6 388 97.4
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 4.5e-185 651.4 387 87.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 7.6e-185 650.6 388 87.9
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.1e-174 615.9 388 82.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 4.6e-174 614.8 388 81.4
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.9e-172 609.4 388 82.0
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 4.3e-172 608.2 388 80.7
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 3.1e-170 602.1 388 79.6
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 4.0e-170 601.7 386 80.1
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 6.9e-170 600.9 388 79.9
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.4e-169 598.6 388 79.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 4.5e-169 598.2 388 79.4
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.7e-168 596.3 388 78.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 2.2e-168 595.9 388 78.9
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.1e-167 593.6 388 79.4
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.2e-167 592.0 388 79.1
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.6e-166 589.7 388 79.1
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.6e-166 589.7 387 79.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 6.0e-166 587.8 388 78.1
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.0e-165 587.0 386 78.2
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.3e-165 586.6 388 77.1
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.8e-165 586.3 389 79.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 3.0e-165 585.5 385 76.9
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 3.9e-165 585.1 386 78.0
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.9e-165 585.1 385 77.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 5.1e-165 584.7 388 77.8
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 7.4e-164 580.9 388 77.1
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 7.4e-164 580.9 385 77.9
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 9.6e-164 580.5 383 77.8
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.3e-163 580.1 388 77.8
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.3e-163 580.1 385 77.4
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.1e-163 579.3 388 77.6
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.8e-163 578.9 380 77.4
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 4.8e-163 578.2 385 77.4
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.4e-162 576.6 388 77.6
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.1e-162 575.5 388 77.1
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.1e-162 575.1 389 77.1
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.6e-161 572.4 388 77.8
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 4.5e-161 571.6 389 77.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.6e-161 570.9 388 76.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.2e-160 569.3 389 76.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.9e-160 568.9 393 76.8
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.8e-160 568.5 388 76.5
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.2e-159 565.1 388 75.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.5e-159 564.7 385 76.1
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 5.5e-159 564.7 406 73.6
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 7.2e-159 564.3 390 75.9
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 9.3e-159 563.9 387 74.4
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.6e-158 563.1 390 75.6
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.6e-158 563.1 384 75.0
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 2.1e-158 562.8 389 75.8
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.7e-158 562.4 386 75.1
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.9e-158 560.8 385 76.1
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.9e-158 560.8 388 74.7
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.0e-157 560.5 377 76.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 6.7e-157 557.8 386 73.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 6.7e-157 557.8 385 74.3
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 6.7e-157 557.8 385 74.3
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 6.7e-157 557.8 388 75.5
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.3e-156 555.4 414 71.7
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.7e-155 552.0 380 75.3
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.4e-154 550.1 388 72.2
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.8e-154 549.7 383 73.1
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.4e-154 549.3 348 81.3
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.4e-154 549.3 383 74.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.3e-154 548.1 417 70.3
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.1e-154 547.4 386 73.8
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.5e-153 546.6 387 74.2
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.0e-153 546.2 347 79.8
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.4e-153 545.4 417 70.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.0e-152 543.9 388 75.5
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.8e-152 542.0 387 73.1
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.8e-152 542.0 417 70.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.5e-152 541.2 417 70.0
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 7.2e-151 537.7 388 73.5
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 9.4e-151 537.3 395 71.4
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 9.4e-151 537.3 388 72.9
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 2.7e-150 535.8 388 72.7
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 3.6e-150 535.4 350 80.0
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 3.0e-149 532.3 389 71.2
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 6.9e-146 521.2 385 71.4
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 9.1e-146 520.8 382 70.9
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 1.2e-145 520.4 385 70.6
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.2e-145 520.4 388 68.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.6e-145 519.2 386 70.2
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 2.6e-145 519.2 386 70.5
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 2.6e-145 519.2 385 70.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 4.5e-145 518.5 392 69.4
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.7e-145 517.7 385 70.4
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 7.7e-145 517.7 386 71.2
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 7.7e-145 517.7 362 74.3
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.0e-144 517.3 382 70.9
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.0e-144 517.3 385 70.4
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.0e-144 517.3 385 72.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 8.5e-144 514.2 386 69.9
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.9e-143 513.1 382 70.7
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.5e-143 512.7 386 69.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.2e-143 512.3 388 69.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 9.4e-143 510.8 385 69.9
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 9.4e-143 510.8 385 69.9
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.0e-141 507.3 388 68.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.8e-141 506.5 388 68.8
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.8e-141 506.5 388 67.8
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 5.2e-141 505.0 388 68.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.6e-140 502.7 386 66.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.7e-139 500.0 383 68.1
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.3e-138 495.0 341 76.5
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.8e-133 479.9 347 71.8
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.8e-130 469.9 386 66.1
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.6e-129 466.8 383 67.1
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.7e-128 463.4 390 65.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 3.8e-128 462.2 397 62.2
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.3e-125 453.0 388 64.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 7.0e-122 441.4 398 61.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.5e-121 439.1 389 61.2
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 5.0e-120 435.3 394 60.4
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.5e-119 433.7 392 59.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-118 430.6 385 61.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.1e-118 429.9 399 58.6
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 4.9e-115 418.7 377 59.9
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.6e-112 407.9 385 59.5
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 3.7e-107 392.5 297 66.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 4.4e-100 369.0 271 71.2
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 4.7e-94 349.0 414 49.8
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.5e-87 326.6 226 73.9
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 6.2e-86 322.0 437 44.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 2.0e-84 317.0 299 60.9
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.4e-83 311.6 364 49.5
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 9.2e-82 308.1 265 60.8
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.2e-75 287.0 387 43.9
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.2e-58 229.6 149 85.2
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 4.2e-58 229.6 464 36.0
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.3e-54 218.0 164 69.5
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-53 214.2 143 79.0
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.5e-52 211.1 243 48.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.5e-44 184.5 173 61.3
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 9.3e-42 175.3 128 73.4
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.5e-36 157.9 395 30.9
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-32 144.8 149 57.0
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 5.1e-32 142.9 89 84.3
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-30 137.9 155 54.8
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.1e-29 133.7 138 59.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 6.9e-29 132.5 166 46.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.7e-27 127.9 108 63.0
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-25 121.7 120 58.3
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.6e-25 121.3 79 78.5
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.6e-25 121.3 213 38.0
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 4.4e-23 113.2 82 68.3
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.0e-21 105.9 82 65.9
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-19 101.7 126 53.2
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.0e-19 99.8 126 53.2
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 1.2e-17 95.1 99 53.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-17 95.1 123 52.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 9.7e-15 85.5 82 50.0
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.1e-13 82.0 106 46.2
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.0e-12 77.8 100 49.0
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.0e-12 77.8 44 88.6
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 5.9e-12 76.3 52 69.2
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 1.7e-11 74.7 94 46.8
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 6.5e-11 72.8 42 83.3
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.5e-10 71.6 51 64.7
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-07 61.6 36 86.1
Medtr2g030260 Medicago truncatula HOM05D004239 ORTHO05D005191 4.4e-07 60.1 42 76.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.2e-06 57.8 38 73.7
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 6.3e-06 56.2 83 42.2
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 8.3e-06 55.8 38 71.1


User provided reference genes

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