Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 0.0e+00 2020.7 1038 100.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 0.0e+00 1850.1 1040 93.0
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 0.0e+00 1215.7 1058 66.0
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.7e-271 939.9 831 63.8
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 9.8e-187 658.3 1085 42.0
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-181 639.8 1100 41.3
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 3.1e-180 636.7 1076 41.1
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.9e-178 630.2 1093 40.8
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 6.4e-178 629.0 979 42.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.4e-177 627.9 1103 40.3
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 9.5e-174 615.1 1078 40.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 3.1e-172 610.1 1078 40.4
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.2e-171 608.2 1117 39.8
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 3.4e-171 606.7 1068 41.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.6e-171 605.5 1112 39.3
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 5.4e-169 599.4 1091 38.5
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.1e-166 591.7 1086 40.3
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.4e-164 583.9 1066 40.2
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 8.9e-164 582.0 1112 40.6
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 4.4e-163 579.7 1095 39.5
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.1e-161 575.1 1057 39.3
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.4e-161 574.7 1085 40.3
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.4e-161 573.9 1086 38.5
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 3.9e-159 566.6 1049 40.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.1e-157 560.8 1047 39.9
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.1e-157 560.8 1066 37.8
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 5.3e-156 556.2 1067 39.8
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 6.9e-156 555.8 1085 39.0
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.4e-154 549.3 1081 38.2
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 3.5e-152 543.5 1078 37.9
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 2.3e-151 540.8 1063 37.4
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 6.6e-151 539.3 1062 39.2
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 4.3e-150 536.6 1059 39.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 5.6e-150 536.2 1059 39.1
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 3.6e-149 533.5 639 49.0
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 6.2e-149 532.7 1087 38.6
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 4.5e-147 526.6 1083 37.9
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 3.2e-145 520.4 1057 36.8
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 5.4e-145 519.6 1031 36.8
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 2.1e-144 517.7 1105 36.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 2.3e-143 514.2 1091 36.4
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 1.1e-142 511.9 1086 36.9
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 6.9e-140 502.7 1158 34.9
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 8.4e-138 495.7 1086 35.8
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 2.7e-136 490.7 1070 34.8
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 3.5e-136 490.3 1094 35.9
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.0e-135 488.8 1088 35.9
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.1e-132 478.8 1084 35.5
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.5e-131 474.9 1074 35.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 2.9e-130 470.7 1094 35.2
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 7.4e-126 456.1 1051 36.1
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 9.7e-126 455.7 1099 34.5
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.8e-124 451.4 555 53.3
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 4.1e-124 450.3 1039 34.4
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 5.9e-123 446.4 1069 34.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 4.5e-115 420.2 1128 32.7
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.0e-114 419.1 1135 32.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.9e-114 417.5 1120 31.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 4.2e-113 413.7 691 40.1
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 7.9e-112 409.5 1080 31.2
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.0e-111 409.1 1093 30.8
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.8e-111 408.3 1062 31.1
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 3.0e-111 407.5 1131 31.5
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.0e-110 404.8 1057 32.5
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.3e-110 404.1 571 41.3
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 7.4e-110 402.9 1083 32.0
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.2e-109 401.4 1098 31.6
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 3.7e-109 400.6 642 39.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.1e-108 399.1 1045 33.5
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 5.5e-105 386.7 748 37.3
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 6.1e-104 383.3 1086 31.8
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 6.1e-104 383.3 1069 31.6
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 2.0e-102 378.3 718 36.6
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.2e-98 364.8 658 36.8
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.2e-98 364.8 1005 31.0
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 2.1e-96 358.2 1045 30.2
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.6e-94 351.3 516 42.8
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 5.7e-94 350.1 664 36.9
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 5.7e-94 350.1 522 39.7
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 5.9e-91 340.1 1237 29.0
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 9.4e-89 332.8 1049 30.5
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.6e-88 330.9 1157 29.9
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 4.7e-88 330.5 1047 30.1
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 7.0e-84 316.6 1055 30.5
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 8.9e-79 299.7 1078 30.0
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 9.8e-78 296.2 771 31.3
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.3e-77 295.8 1100 28.7
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 3.7e-77 294.3 672 34.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.1e-76 292.7 738 32.7
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.1e-76 292.7 670 34.0
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 2.7e-75 288.1 1231 27.3
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 3.5e-75 287.7 1234 26.7
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 4.6e-75 287.3 1134 28.0
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 5.9e-75 287.0 1046 27.2
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 1.0e-74 286.2 1085 28.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 5.6e-73 280.4 729 33.2
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 9.5e-73 279.6 681 33.3
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.4e-68 265.0 955 28.5
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 4.7e-64 250.8 378 39.2
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 8.1e-64 250.0 184 63.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 4.1e-60 237.7 774 32.2
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.1e-56 225.3 393 34.9
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 3.3e-49 201.4 405 32.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.2e-48 199.5 232 48.3
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.2e-48 199.5 177 55.4
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.0e-46 192.2 551 28.5
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 1.9e-41 175.6 298 39.3
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.4e-39 168.7 808 26.5
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.9e-37 161.0 305 32.8
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 4.2e-36 157.9 393 29.0
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 7.1e-36 157.1 400 30.0
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.8e-32 145.2 91 74.7
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 5.3e-31 141.0 244 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.2e-30 139.8 276 29.7
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 5.5e-28 131.0 262 33.6
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 4.2e-20 104.8 128 47.7
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 4.5e-14 84.7 284 27.8
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 8.4e-13 80.5 99 44.4
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 9.3e-12 77.0 164 38.4
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 7.4e-09 67.4 162 35.8
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 3.4e-06 58.5 172 30.2
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.4e-06 58.5 281 28.1


User provided reference genes

Program Settings