Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 8.1e-51 203.4 97 100.0
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.6e-22 109.4 101 58.4
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.8e-21 105.9 102 61.8
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 5.6e-20 100.9 101 56.4
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 7.4e-20 100.5 103 59.2
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.3e-19 99.8 101 58.4
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-19 99.8 101 58.4
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 1.3e-19 99.8 101 56.4
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.8e-19 98.6 101 57.4
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 3.7e-19 98.2 101 56.4
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 4.8e-19 97.8 101 55.4
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 4.8e-19 97.8 102 57.8
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.1e-18 96.7 100 56.0
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.1e-18 96.7 104 56.7
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 1.4e-18 96.3 101 54.5
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 5.3e-18 94.4 101 53.5
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 5.3e-18 94.4 101 53.5
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 5.3e-18 94.4 101 53.5
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 5.3e-18 94.4 104 53.8
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 6.9e-18 94.0 101 52.5
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 9.0e-18 93.6 97 53.6
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 1.2e-17 93.2 101 52.5
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.5e-17 92.8 101 53.5
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 1.5e-17 92.8 97 54.6
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 2.0e-17 92.4 49 89.8
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 2.0e-17 92.4 101 52.5
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 2.0e-17 92.4 101 53.5
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.6e-17 92.0 100 53.0
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 2.6e-17 92.0 100 55.0
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 2.6e-17 92.0 101 53.5
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 3.4e-17 91.7 106 50.9
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 4.5e-17 91.3 97 51.5
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 5.8e-17 90.9 102 54.9
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 5.8e-17 90.9 101 51.5
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 5.8e-17 90.9 104 50.0
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 7.6e-17 90.5 98 56.1
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.0e-16 90.1 101 55.4
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.0e-16 90.1 101 54.5
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.7e-16 89.4 94 52.1
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.7e-16 89.4 101 51.5
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 2.9e-16 88.6 101 53.5
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.9e-16 88.6 118 47.5
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.9e-16 88.6 118 47.5
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 2.9e-16 88.6 100 55.0
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 2.9e-16 88.6 96 54.2
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 2.9e-16 88.6 96 54.2
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 3.8e-16 88.2 101 52.5
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 4.9e-16 87.8 94 52.1
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 6.5e-16 87.4 103 52.4
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 6.5e-16 87.4 98 51.0
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 6.5e-16 87.4 101 53.5
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 6.5e-16 87.4 101 52.5
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.1e-15 86.7 101 52.5
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.1e-15 86.7 102 52.9
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.1e-15 86.7 100 52.0
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 1.4e-15 86.3 98 51.0
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.4e-15 86.3 101 52.5
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 1.4e-15 86.3 104 51.9
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.4e-15 86.3 93 52.7
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 1.4e-15 86.3 106 50.0
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 1.4e-15 86.3 105 54.3
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 1.4e-15 86.3 101 51.5
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 1.4e-15 86.3 101 51.5
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.5e-15 85.5 101 51.5
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 2.5e-15 85.5 100 52.0
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 3.2e-15 85.1 101 51.5
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.2e-15 85.1 110 49.1
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 4.2e-15 84.7 100 49.0
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 4.2e-15 84.7 106 53.8
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 5.5e-15 84.3 101 51.5
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 5.5e-15 84.3 101 51.5
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 7.1e-15 84.0 101 50.5
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 9.3e-15 83.6 101 50.5
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 9.3e-15 83.6 101 50.5
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 1.6e-14 82.8 94 53.2
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 1.6e-14 82.8 94 53.2
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.6e-14 82.8 102 50.0
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 1.6e-14 82.8 100 49.0
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 1.6e-14 82.8 100 49.0
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 1.6e-14 82.8 100 49.0
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 1.6e-14 82.8 100 49.0
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 2.1e-14 82.4 94 54.3
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 2.1e-14 82.4 101 49.5
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 2.1e-14 82.4 94 53.2
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 2.1e-14 82.4 94 53.2
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.1e-14 82.4 101 50.5
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.1e-14 82.4 101 50.5
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.7e-14 82.0 102 50.0
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 2.7e-14 82.0 94 53.2
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 3.5e-14 81.6 94 52.1
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 3.5e-14 81.6 101 48.5
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 4.6e-14 81.3 94 52.1
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 4.6e-14 81.3 97 50.5
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 4.6e-14 81.3 95 51.6
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 4.6e-14 81.3 94 52.1
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 4.6e-14 81.3 101 48.5
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 6.0e-14 80.9 101 49.5
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 7.9e-14 80.5 105 52.4
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 1.0e-13 80.1 99 48.5
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 1.3e-13 79.7 101 47.5
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 1.8e-13 79.3 90 53.3
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 2.3e-13 79.0 101 46.5
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 2.3e-13 79.0 98 49.0
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 3.0e-13 78.6 97 49.5
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 3.0e-13 78.6 86 54.7
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 3.0e-13 78.6 92 51.1
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 3.9e-13 78.2 100 44.0
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 3.9e-13 78.2 97 49.5
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 5.1e-13 77.8 94 48.9
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 8.7e-13 77.0 94 50.0
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 8.7e-13 77.0 104 49.0
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 1.5e-12 76.3 101 47.5
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 2.5e-12 75.5 104 50.0
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 2.5e-12 75.5 122 42.6
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 2.5e-12 75.5 101 45.5
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 7.4e-12 73.9 51 72.5
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 1.3e-11 73.2 107 47.7
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 1.3e-11 73.2 104 47.1
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 2.8e-11 72.0 92 47.8
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 4.8e-11 71.2 102 49.0
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 8.2e-11 70.5 93 51.6
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 8.2e-11 70.5 107 45.8
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.1e-10 70.1 105 48.6
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 1.4e-10 69.7 146 35.6
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 1.8e-10 69.3 98 43.9
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 3.1e-10 68.6 105 47.6
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 3.1e-10 68.6 86 51.2
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 3.1e-10 68.6 86 48.8
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 4.1e-10 68.2 88 50.0
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 4.1e-10 68.2 106 47.2
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 6.9e-10 67.4 98 42.9
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 6.9e-10 67.4 98 42.9
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 9.0e-10 67.0 87 49.4
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 9.0e-10 67.0 89 47.2
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 1.2e-09 66.6 87 49.4
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.2e-09 66.6 93 48.4
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 2.0e-09 65.9 79 51.9
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 2.0e-09 65.9 98 41.8
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 2.0e-09 65.9 48 70.8
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 2.6e-09 65.5 87 48.3
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 3.4e-09 65.1 103 46.6
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 3.4e-09 65.1 86 47.7
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 3.4e-09 65.1 93 49.5
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 5.9e-09 64.3 89 47.2
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 1.0e-08 63.5 87 48.3
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 1.0e-08 63.5 81 46.9
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 1.3e-08 63.2 95 43.2
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 1.3e-08 63.2 79 50.6
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 3.8e-08 61.6 46 67.4
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 5.0e-08 61.2 39 79.5
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 5.0e-08 61.2 39 79.5
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 5.0e-08 61.2 39 79.5
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 5.0e-08 61.2 39 79.5
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 6.5e-08 60.8 44 68.2
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.1e-07 60.1 44 63.6
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 1.4e-07 59.7 39 76.9
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 5.5e-07 57.8 103 35.9
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 5.5e-07 57.8 105 39.0
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 5.5e-07 57.8 46 63.0
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 5.5e-07 57.8 89 41.6
GSVIVG01031131001 Vitis vinifera HOM05D002454 ORTHO05D002581 1.2e-06 56.6 78 51.3
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 4.6e-06 54.7 36 75.0


User provided reference genes

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