Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 3.8e-66 254.6 121 100.0
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.5e-30 134.0 66 93.9
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 4.3e-25 118.2 66 78.8
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 7.3e-25 117.5 66 74.2
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 7.3e-25 117.5 66 81.8
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 8.0e-24 114.0 66 78.8
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.0e-23 113.6 66 77.3
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 2.3e-23 112.5 66 75.8
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 4.0e-23 111.7 66 72.7
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 4.4e-22 108.2 66 72.7
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 4.4e-22 108.2 66 72.7
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 9.8e-22 107.1 66 72.7
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 3.7e-21 105.1 66 69.7
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.4e-21 104.4 66 69.7
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 6.4e-21 104.4 66 69.7
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 8.3e-21 104.0 66 68.2
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.1e-20 103.6 66 69.7
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.1e-20 103.6 66 68.2
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.1e-20 103.6 66 68.2
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-20 102.8 66 66.7
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-20 102.8 66 66.7
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 4.1e-20 101.7 66 68.2
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 7.0e-20 100.9 66 68.2
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.6e-19 99.8 66 62.1
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 2.0e-19 99.4 66 65.2
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.7e-19 99.0 66 65.2
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.7e-19 99.0 66 65.2
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.5e-19 98.6 66 63.6
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 4.6e-19 98.2 66 65.2
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 4.6e-19 98.2 66 63.6
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 6.0e-19 97.8 66 62.1
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 6.0e-19 97.8 66 63.6
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.0e-18 97.1 66 66.7
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.0e-18 97.1 66 66.7
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.0e-18 97.1 66 66.7
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.0e-18 97.1 66 66.7
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.3e-18 96.7 66 63.6
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-18 96.7 66 63.6
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-18 96.7 66 63.6
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-18 96.7 66 63.6
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.3e-18 96.7 66 60.6
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.3e-18 96.7 66 63.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.3e-18 95.9 66 65.2
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 3.9e-18 95.1 66 60.6
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 3.9e-18 95.1 66 62.1
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 3.9e-18 95.1 66 60.6
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 5.0e-18 94.7 66 59.1
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 5.0e-18 94.7 66 60.6
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 6.6e-18 94.4 66 57.6
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.6e-18 94.0 65 64.6
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 8.6e-18 94.0 66 57.6
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 8.6e-18 94.0 66 57.6
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.1e-17 93.6 66 60.6
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.1e-17 93.6 66 57.6
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.1e-17 93.6 66 59.1
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-17 93.2 66 57.6
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.9e-17 92.8 66 56.1
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.9e-17 92.8 66 60.6
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.9e-17 92.8 66 56.1
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.5e-17 92.4 66 60.6
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.5e-17 92.4 66 57.6
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 2.5e-17 92.4 66 56.1
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.3e-17 92.0 101 45.5
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 4.3e-17 91.7 65 61.5
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 4.3e-17 91.7 66 57.6
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 5.6e-17 91.3 66 59.1
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 7.3e-17 90.9 66 59.1
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 9.5e-17 90.5 66 57.6
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.2e-16 90.1 66 59.1
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-16 90.1 66 56.1
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.6e-16 89.7 66 59.1
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.1e-16 89.4 85 49.4
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 2.1e-16 89.4 86 51.2
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 2.1e-16 89.4 86 51.2
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.8e-16 89.0 66 56.1
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 2.8e-16 89.0 66 53.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.8e-16 89.0 79 54.4
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 3.6e-16 88.6 66 59.1
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 4.7e-16 88.2 66 56.1
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 4.7e-16 88.2 66 56.1
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.7e-16 88.2 66 56.1
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 6.2e-16 87.8 66 56.1
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 6.2e-16 87.8 86 46.5
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 8.1e-16 87.4 66 57.6
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 8.1e-16 87.4 66 53.0
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.1e-15 87.0 59 62.7
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.4e-15 86.7 66 53.0
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.8e-15 86.3 82 45.1
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.8e-15 86.3 66 51.5
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.3e-15 85.9 79 51.9
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.1e-15 85.5 66 56.1
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 3.1e-15 85.5 66 57.6
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.0e-15 85.1 124 38.7
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 4.0e-15 85.1 66 54.5
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.2e-15 84.7 66 54.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 5.2e-15 84.7 66 56.1
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 6.8e-15 84.3 66 54.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 6.8e-15 84.3 66 57.6
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 6.8e-15 84.3 62 54.8
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 8.9e-15 84.0 86 46.5
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 8.9e-15 84.0 66 54.5
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.5e-14 83.2 66 53.0
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 2.0e-14 82.8 66 56.1
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.0e-14 82.8 66 53.0
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.0e-14 82.8 90 47.8
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 4.4e-14 81.6 62 51.6
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 4.4e-14 81.6 105 41.0
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.4e-14 81.6 66 50.0
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 5.8e-14 81.3 66 47.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.8e-14 81.3 66 53.0
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 5.8e-14 81.3 66 50.0
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 7.5e-14 80.9 66 53.0
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 7.5e-14 80.9 66 47.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 7.5e-14 80.9 105 42.9
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 7.5e-14 80.9 105 42.9
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 7.5e-14 80.9 105 42.9
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 7.5e-14 80.9 61 55.7
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 7.5e-14 80.9 105 42.9
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 7.5e-14 80.9 73 50.7
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 7.5e-14 80.9 66 53.0
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 7.5e-14 80.9 66 53.0
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 9.8e-14 80.5 61 57.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 9.8e-14 80.5 66 54.5
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.3e-13 80.1 66 53.0
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.3e-13 80.1 66 48.5
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.7e-13 79.7 66 45.5
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.7e-13 79.7 66 48.5
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.7e-13 79.7 66 50.0
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.7e-13 79.7 61 55.7
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.7e-13 79.7 66 53.0
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.2e-13 79.3 66 50.0
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.2e-13 79.3 66 54.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 2.2e-13 79.3 86 44.2
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.9e-13 79.0 61 57.4
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 2.9e-13 79.0 61 54.1
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.9e-13 79.0 66 47.0
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.9e-13 79.0 61 54.1
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.9e-13 79.0 66 54.5
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.7e-13 78.6 66 51.5
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 4.9e-13 78.2 66 47.0
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 4.9e-13 78.2 66 47.0
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 4.9e-13 78.2 61 54.1
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 4.9e-13 78.2 86 44.2
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 6.4e-13 77.8 66 47.0
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 6.4e-13 77.8 66 47.0
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 6.4e-13 77.8 86 44.2
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.4e-12 76.6 61 49.2
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.4e-12 76.6 66 50.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.4e-12 76.6 66 50.0
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.4e-12 76.6 60 53.3
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 2.4e-12 75.9 66 47.0
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.2e-12 75.5 67 52.2
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.2e-12 75.5 66 51.5
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 3.2e-12 75.5 61 52.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.1e-12 75.1 66 51.5
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 4.1e-12 75.1 66 50.0
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 5.4e-12 74.7 66 47.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 7.1e-12 74.3 66 50.0
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 4.6e-11 71.6 60 48.3
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.6e-11 71.6 66 48.5
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 7.8e-11 70.9 66 45.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 7.8e-11 70.9 66 45.5
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.0e-10 70.5 66 45.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.3e-10 70.1 60 50.0
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.7e-10 69.7 81 39.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.7e-10 69.7 75 44.0
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 5.1e-10 68.2 61 50.8
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 8.6e-10 67.4 51 52.9
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.1e-09 67.0 83 41.0
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.9e-09 66.2 60 50.0
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.5e-09 65.9 60 50.0
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.3e-09 65.1 46 58.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 5.6e-09 64.7 60 45.0
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 3.6e-08 62.0 67 44.8


User provided reference genes

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