Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 9.0e-128 460.3 239 100.0
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 1.5e-106 389.8 262 80.5
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 5.0e-78 295.0 262 66.0
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 9.5e-77 290.8 262 64.5
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 8.6e-62 241.1 264 54.5
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 5.2e-59 231.9 268 53.0
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 6.8e-59 231.5 264 53.0
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 8.9e-59 231.1 270 53.7
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 9.9e-58 227.6 275 52.4
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 8.3e-57 224.6 255 54.1
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.4e-56 223.0 329 47.7
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 2.4e-56 223.0 268 52.2
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 7.1e-56 221.5 256 53.1
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 1.6e-55 220.3 263 51.7
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 3.5e-55 219.2 263 51.0
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.5e-55 219.2 257 52.9
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.3e-54 217.2 244 54.5
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 3.9e-54 215.7 263 53.2
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 8.6e-54 214.5 277 49.5
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.3e-53 212.2 268 52.6
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.1e-52 209.9 287 48.1
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.1e-51 207.6 258 50.0
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 6.8e-51 204.9 272 48.2
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 1.2e-50 204.1 260 50.0
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.5e-50 203.8 240 52.1
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.4e-50 202.6 240 52.1
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 4.4e-50 202.2 305 47.2
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.3e-49 200.7 266 50.0
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 1.3e-49 200.7 314 44.6
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 2.9e-49 199.5 306 45.1
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 4.9e-49 198.7 271 47.6
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.9e-48 196.8 264 51.5
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.4e-48 196.4 267 47.6
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 9.2e-48 194.5 280 47.1
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 2.1e-47 193.4 256 48.4
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 3.5e-47 192.6 325 42.2
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 6.0e-47 191.8 262 49.2
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 6.0e-47 191.8 255 47.8
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.3e-46 190.7 278 46.4
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.1e-45 187.6 258 47.7
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 1.5e-45 187.2 251 47.8
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.9e-45 186.8 253 46.6
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 3.3e-45 186.0 267 50.9
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 4.3e-45 185.7 251 46.6
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 4.3e-45 185.7 232 49.1
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 4.3e-45 185.7 263 47.1
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 1.2e-44 184.1 259 46.7
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 3.6e-44 182.6 256 46.9
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 8.1e-44 181.4 254 46.5
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.1e-43 181.0 247 48.6
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.8e-43 180.3 240 47.5
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 1.8e-43 180.3 262 46.6
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 3.1e-43 179.5 186 56.5
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 5.2e-43 178.7 264 47.0
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 6.9e-43 178.3 270 46.7
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 6.9e-43 178.3 282 45.4
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 9.0e-43 177.9 247 47.4
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 9.0e-43 177.9 242 46.7
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 1.2e-42 177.6 246 46.3
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 1.2e-42 177.6 246 46.3
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 1.5e-42 177.2 287 43.2
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.5e-42 177.2 246 48.8
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.0e-42 176.8 248 46.0
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 2.6e-42 176.4 259 45.9
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 5.8e-42 175.3 246 47.6
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.3e-41 174.1 271 42.8
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.3e-41 174.1 270 45.6
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 2.2e-41 173.3 279 43.7
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 3.8e-41 172.6 253 47.0
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 4.9e-41 172.2 284 43.3
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 8.4e-41 171.4 234 47.4
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 8.4e-41 171.4 256 45.3
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 1.4e-40 170.6 239 45.6
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 2.4e-40 169.9 241 45.2
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 3.2e-40 169.5 257 47.1
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 9.3e-40 167.9 255 45.1
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.1e-39 166.8 233 46.8
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 3.5e-39 166.0 231 48.9
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 6.0e-39 165.2 247 45.3
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 7.8e-39 164.9 207 48.8
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.0e-38 164.5 235 44.7
CSS0014814 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.0e-38 164.5 158 62.0
CSS0003239 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.7e-38 163.7 158 61.4
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 3.0e-38 162.9 210 49.0
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 5.1e-38 162.2 246 44.7
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 5.1e-38 162.2 246 44.7
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.9e-37 160.2 275 43.6
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 1.9e-37 160.2 177 55.9
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 3.3e-37 159.5 225 47.6
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 7.3e-37 158.3 282 42.2
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.3e-36 157.5 236 43.6
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 1.6e-36 157.1 259 41.7
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 6.2e-36 155.2 189 51.9
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 1.4e-35 154.1 220 46.4
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.8e-35 153.7 239 46.0
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 6.9e-35 151.8 278 40.3
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 4.5e-34 149.1 150 62.0
Sabra05G0021300 Salix brachista HOM05D001340 ORTHO05D005342 4.9e-33 145.6 142 62.0
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 1.1e-32 144.4 186 49.5
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 3.2e-32 142.9 226 44.7
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 9.3e-32 141.4 226 42.9
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 1.2e-31 141.0 255 41.2
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 1.6e-31 140.6 211 45.0
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 1.3e-30 137.5 217 43.3
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.1e-28 130.2 193 44.0
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.0e-26 123.6 209 43.5
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 1.9e-24 117.1 149 49.0
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 7.1e-24 115.2 273 34.1
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 7.9e-23 111.7 239 34.7
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.0e-22 111.3 157 41.4
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 3.9e-22 109.4 193 38.3
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.5e-21 107.5 306 31.7
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 3.3e-21 106.3 80 65.0
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 9.6e-21 104.8 181 40.3
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 8.2e-20 101.7 147 44.2
BcaC06g31772 Brassica carinata HOM05D001340 ORTHO05D005342 1.4e-19 100.9 118 55.9
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 2.4e-19 100.1 250 34.4
Sabra05G0010300 Salix brachista HOM05D001340 ORTHO05D005342 2.9e-17 93.2 108 53.7
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.4e-16 90.9 167 40.7
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.9e-16 90.5 126 44.4
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 1.9e-16 90.5 238 33.2
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 2.5e-16 90.1 124 46.0
Sabra01G0113700 Salix brachista HOM05D001340 ORTHO05D005342 5.5e-16 89.0 101 55.4
PSO675G7546 Papaver somniferum HOM05D001340 ORTHO05D005342 7.1e-16 88.6 50 86.0
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 9.3e-16 88.2 114 44.7
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.6e-15 87.4 126 43.7
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 3.9e-14 82.8 123 43.1
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 5.1e-14 82.4 245 31.4
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 6.7e-14 82.0 224 33.0
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.7e-14 82.0 129 41.1
SEGI_40234 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 8.7e-14 81.6 127 42.5
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 1.1e-13 81.3 124 42.7
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.5e-13 80.9 83 56.6
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.5e-13 80.9 120 46.7
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 2.5e-13 80.1 124 38.7
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 2.5e-13 80.1 122 50.8
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 1.6e-12 77.4 75 53.3
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.2e-12 77.0 118 40.7
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.4e-11 73.6 117 41.0
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 3.1e-11 73.2 202 29.2
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 4.5e-10 69.3 142 34.5
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 1.7e-09 67.4 57 63.2
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 2.2e-09 67.0 71 54.9
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 2.2e-09 67.0 127 40.2
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 2.2e-09 67.0 52 69.2
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 3.8e-09 66.2 71 60.6
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 5.0e-09 65.9 56 64.3
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.1e-08 64.7 189 31.7
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 1.2e-07 61.2 184 29.3
Hund23304 Selenicereus undatus HOM05D009075 ORTHO05D011069 1.6e-07 60.8 54 66.7
AUR62020511 Chenopodium quinoa HOM05D001340 ORTHO05D011069 3.6e-07 59.7 57 52.6
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 6.1e-07 58.9 58 51.7
AUR62020544 Chenopodium quinoa HOM05D017185 ORTHO05D002895 7.9e-07 58.5 43 67.4
AUR62020541 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.4e-06 57.8 69 50.7


User provided reference genes

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