Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.7e-58 228.4 112 100.0
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.9e-52 208.4 111 89.2
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 4.2e-51 204.5 108 91.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.1e-50 202.2 111 85.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.6e-50 201.1 112 87.5
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 3.2e-43 178.3 114 81.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 4.2e-43 177.9 114 80.7
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.6e-42 174.9 114 79.8
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.1e-41 171.0 114 78.1
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 8.7e-41 170.2 112 74.1
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 8.7e-41 170.2 110 75.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.9e-40 169.1 118 72.0
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.5e-40 168.7 114 74.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.3e-40 167.9 112 75.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.3e-40 167.9 111 73.9
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 4.3e-40 167.9 112 75.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 5.7e-40 167.5 111 71.2
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.7e-40 166.8 112 74.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.7e-39 166.0 112 74.1
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.7e-39 166.0 112 73.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.2e-39 165.6 112 75.0
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.8e-39 165.2 112 76.8
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.7e-39 164.9 114 72.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 3.7e-39 164.9 112 71.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.8e-39 164.5 113 71.7
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.8e-39 164.5 114 71.1
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 6.3e-39 164.1 110 72.7
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 8.2e-39 163.7 112 70.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.1e-38 163.3 116 74.1
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.1e-38 163.3 113 71.7
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-38 162.9 113 70.8
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.8e-38 162.5 113 73.5
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-38 162.5 112 73.2
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.8e-38 162.5 112 74.1
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.4e-38 162.2 116 69.8
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.4e-38 162.2 113 71.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.1e-38 161.8 112 73.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 5.3e-38 161.0 110 74.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 5.3e-38 161.0 110 74.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 5.3e-38 161.0 110 74.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 5.3e-38 161.0 112 74.1
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.5e-37 159.5 112 72.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.5e-37 159.5 112 74.1
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.6e-37 158.7 113 69.0
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.4e-37 158.3 114 71.9
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.4e-37 158.3 114 70.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.5e-37 157.9 113 69.9
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 5.9e-37 157.5 113 73.5
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 7.7e-37 157.1 93 78.5
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.0e-36 156.8 112 68.8
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-36 155.2 120 67.5
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.9e-36 155.2 99 77.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.8e-36 154.8 155 58.7
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.0e-36 154.5 92 79.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 6.5e-36 154.1 112 69.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.5e-36 153.7 118 65.3
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 8.5e-36 153.7 114 69.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.5e-36 153.7 88 81.8
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.1e-35 153.3 86 84.9
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.1e-35 153.3 112 68.8
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.4e-35 152.9 114 69.3
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.4e-35 152.9 98 78.6
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.9e-35 152.5 90 80.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.9e-35 152.5 87 85.1
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 3.2e-35 151.8 115 64.3
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 4.2e-35 151.4 112 63.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 5.5e-35 151.0 112 63.4
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-35 150.6 112 63.4
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.2e-35 150.6 102 70.6
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 9.4e-35 150.2 112 63.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 9.4e-35 150.2 99 77.8
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-34 149.8 112 62.5
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.2e-34 149.8 112 63.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-34 149.8 141 58.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.1e-34 149.1 111 65.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.7e-34 148.7 146 56.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-34 148.3 112 62.5
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.6e-34 148.3 102 68.6
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.0e-33 146.7 114 68.4
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-33 146.0 112 62.5
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.8e-33 146.0 112 61.6
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.8e-33 146.0 101 67.3
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-33 145.6 112 61.6
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.3e-33 145.6 112 60.7
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.3e-33 145.6 90 80.0
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.3e-33 145.6 89 76.4
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.0e-33 145.2 108 70.4
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.0e-33 145.2 112 61.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.0e-33 145.2 113 65.5
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.0e-33 145.2 88 81.8
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.9e-33 144.8 112 60.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.9e-33 144.8 111 70.3
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 5.1e-33 144.4 112 61.6
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.1e-33 144.4 108 68.5
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 5.1e-33 144.4 113 63.7
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.7e-33 144.1 108 69.4
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 6.7e-33 144.1 115 69.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.1e-32 143.3 87 79.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.1e-32 143.3 113 61.1
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.0e-32 142.5 112 63.4
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.0e-32 142.5 109 59.6
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.6e-32 142.1 108 67.6
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 4.4e-32 141.4 112 59.8
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.4e-32 141.4 87 79.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.4e-32 140.6 112 67.0
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 9.7e-32 140.2 113 61.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.7e-31 139.4 112 58.0
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.2e-31 139.0 157 49.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 8.2e-31 137.1 113 60.2
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 8.2e-31 137.1 87 75.9
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.1e-30 134.8 112 58.0
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 9.1e-30 133.7 111 61.3
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-29 133.3 88 75.0
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.2e-29 133.3 112 58.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.5e-29 132.9 95 67.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.5e-29 131.3 88 72.7
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 5.9e-29 131.0 88 73.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.7e-28 129.4 125 56.8
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.8e-28 128.3 81 79.0
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 9.4e-27 123.6 116 56.0
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.7e-26 122.1 86 72.1
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.7e-26 122.1 117 55.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.0e-25 120.2 210 37.6
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.9e-25 118.2 116 56.9
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.9e-25 118.2 72 77.8
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.7e-25 117.5 84 64.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.7e-25 117.5 84 64.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.5e-24 116.3 120 55.0
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.6e-24 115.5 95 70.5
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.7e-24 114.4 92 65.2
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.4e-24 114.0 85 67.1
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-23 113.2 84 63.1
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.2e-23 112.5 77 68.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.8e-23 112.1 77 68.8
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.7e-23 111.7 81 65.4
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.7e-23 111.7 105 58.1
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.1e-22 110.2 78 66.7
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 3.1e-22 108.6 92 58.7
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.9e-21 104.4 91 58.2
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.5e-20 100.5 83 65.1
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.1e-19 100.1 90 60.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 4.2e-19 98.2 86 61.6
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 6.1e-18 94.4 69 62.3
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.0e-17 92.0 81 60.5
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-16 89.7 74 59.5
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.0e-16 89.4 53 79.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.6e-16 89.0 72 59.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.6e-16 89.0 72 59.7
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.7e-15 86.3 79 50.6
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.3e-15 84.3 61 70.5
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.1e-14 82.0 63 61.9
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.2e-13 80.1 48 81.2
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-12 76.6 85 49.4
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 2.9e-12 75.5 68 51.5
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.9e-12 75.5 52 69.2
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 6.5e-12 74.3 69 56.5
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.2e-11 71.6 53 64.2
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 3.0e-09 65.5 78 44.9
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 5.7e-08 61.2 72 44.4
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 7.5e-08 60.8 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 7.5e-08 60.8 65 44.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.3e-07 60.1 48 66.7
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.3e-07 57.8 48 62.5


User provided reference genes

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